Wall clock time and date at job start Sun Mar 29 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47267 * 2 1 4 4 H 1.09006 * 109.47033 * 305.00175 * 3 2 1 5 5 C 1.50697 * 109.47068 * 185.00083 * 3 2 1 6 6 H 1.08004 * 119.99707 * 239.99620 * 5 3 2 7 7 C 1.37872 * 120.00160 * 60.00128 * 5 3 2 8 8 N 1.31522 * 119.99730 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47221 * 89.99797 * 9 7 5 11 11 H 1.48503 * 109.47351 * 209.99774 * 9 7 5 12 12 H 1.48502 * 109.47241 * 329.99555 * 9 7 5 13 13 N 1.46904 * 109.47327 * 64.99913 * 3 2 1 14 14 C 1.47843 * 110.99640 * 69.15576 * 13 3 2 15 15 C 1.54916 * 104.79337 * 146.36598 * 14 13 3 16 16 C 1.55398 * 101.74107 * 323.02060 * 15 14 13 17 17 C 1.52992 * 110.84620 * 153.86232 * 16 15 14 18 18 C 1.47198 * 110.67729 * 277.17870 * 16 15 14 19 19 N 5.71577 * 131.71416 * 22.17191 * 2 1 3 20 20 C 1.47439 * 111.00045 * 190.00285 * 13 3 2 21 21 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46953 * 300.00045 * 1 2 3 23 23 H 1.08995 * 109.47150 * 60.00304 * 1 2 3 24 24 H 1.08995 * 109.46835 * 239.99607 * 2 1 3 25 25 H 1.09007 * 109.46810 * 120.00292 * 2 1 3 26 26 H 0.97003 * 119.99411 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.37823 * 265.19398 * 14 13 3 28 28 H 1.09001 * 110.37314 * 27.42672 * 14 13 3 29 29 H 1.08995 * 110.98807 * 81.01940 * 15 14 13 30 30 H 1.08997 * 110.99076 * 204.80412 * 15 14 13 31 31 H 1.09004 * 109.47211 * 306.46159 * 17 16 15 32 32 H 1.09000 * 109.47252 * 66.46108 * 17 16 15 33 33 H 1.09007 * 109.47308 * 186.46128 * 17 16 15 34 34 H 1.09002 * 109.88998 * 356.14887 * 20 13 3 35 35 H 1.09003 * 109.88733 * 117.17548 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3365 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5548 -0.3502 -0.7602 11 1 6.3830 0.9222 -2.8173 12 1 6.5570 2.0737 -0.6903 13 7 1.6514 2.0993 1.2552 14 6 2.3939 1.5329 2.4014 15 6 2.5977 2.7256 3.3689 16 6 2.8417 3.8980 2.3785 17 6 2.4390 5.2338 3.0064 18 6 4.2480 3.9280 1.9449 19 7 5.3334 3.9512 1.6102 20 6 1.9135 3.5490 1.1961 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.8293 -0.0619 -2.9495 27 1 1.8088 0.7495 2.8829 28 1 3.3560 1.1396 2.0733 29 1 1.7029 2.9013 3.9658 30 1 3.4660 2.5658 4.0081 31 1 1.4137 5.1696 3.3706 32 1 3.1064 5.4603 3.8379 33 1 2.5101 6.0232 2.2581 34 1 2.4022 3.7994 0.2545 35 1 0.9766 4.0991 1.2853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693958751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:03 Heat of formation + Delta-G solvation = 4.631838 kcal Electronic energy + Delta-G solvation = -16017.453772 eV Core-core repulsion = 13628.427036 eV Total energy + Delta-G solvation = -2389.026736 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68817 -37.46338 -36.03060 -33.84350 -32.33848 -30.41905 -28.45984 -26.52665 -24.72296 -23.14473 -22.69816 -20.80975 -18.47035 -17.92462 -16.98882 -16.08569 -15.77334 -15.22378 -14.92680 -14.75935 -14.09866 -14.04316 -13.89917 -13.66786 -13.53707 -13.12640 -12.98372 -12.88974 -12.65338 -12.45991 -12.38001 -12.02246 -11.80142 -11.70720 -11.58459 -11.42437 -11.18826 -10.88893 -10.44715 -8.93142 -8.07892 -6.25443 1.21339 1.25670 1.38494 1.80746 1.88323 2.32533 2.99235 3.11169 3.59095 3.70250 3.92319 4.08356 4.61610 4.63781 4.71155 4.81162 4.86672 4.94138 4.98375 5.07335 5.12337 5.17761 5.18852 5.32744 5.39848 5.41791 5.51361 5.54788 5.68119 5.82823 6.09491 6.17579 6.39107 6.60231 6.69351 6.98131 7.44239 8.86838 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.013864 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.832167 B = 2019.138170 C = 2952.365810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.005 0.995 5 C -0.542 4.542 6 H 0.061 0.939 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.032 3.968 15 C -0.099 4.099 16 C 0.011 3.989 17 C -0.122 4.122 18 C 0.241 3.759 19 N -0.500 5.500 20 C 0.061 3.939 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.028 0.972 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 6.031 11.574 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.023 0.977 5 C -0.581 4.581 6 H 0.079 0.921 7 C -0.170 4.170 8 N -0.546 5.546 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.239 5.239 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.006 3.994 17 C -0.181 4.181 18 C -0.075 4.075 19 N -0.176 5.176 20 C -0.069 4.069 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.890 5.884 10.930 13.739 hybrid contribution 2.178 -0.286 -1.021 2.422 sum -3.712 5.597 9.909 11.970 Atomic orbital electron populations 1.21563 0.95884 0.99754 1.00991 1.21374 0.94808 0.98021 1.00054 1.19226 0.91215 0.91934 0.86981 0.97672 1.22214 0.94476 1.36541 1.04907 0.92134 1.25366 0.99755 0.95722 0.96196 1.69974 1.35341 1.39444 1.09814 0.86214 0.84286 0.78068 0.77151 1.20307 1.20745 1.20995 1.64008 1.53732 1.02067 1.04079 1.23122 0.97104 0.97996 0.91343 1.22940 1.04168 0.90737 0.95895 1.19856 0.80678 1.01057 0.97786 1.21776 1.04300 0.91298 1.00689 1.29690 0.95196 0.91007 0.91622 1.81163 1.15343 1.10839 1.10287 1.22944 0.98132 0.90705 0.95072 0.93893 0.91594 0.94960 0.92500 0.95219 0.93150 0.89931 0.95321 0.85325 0.90425 0.87146 0.90891 0.91786 0.95455 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.80 71.98 0.71 -4.00 16 2 C -0.10 -4.81 5.24 30.59 0.16 -4.65 16 3 C 0.21 10.24 1.51 44.17 0.07 10.31 16 4 H 0.01 0.29 8.03 -2.38 -0.02 0.27 16 5 C -0.54 -29.18 6.65 25.60 0.17 -29.01 16 6 H 0.06 3.26 4.08 -2.91 -0.01 3.25 16 7 C 0.03 1.67 5.29 84.65 0.45 2.12 16 8 N -0.91 -52.66 11.29 21.45 0.24 -52.42 16 9 Si 0.91 46.96 29.54 68.60 2.03 48.99 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.28 -15.35 7.11 99.48 0.71 -14.64 16 13 N -0.52 -19.24 4.58 -864.73 -3.96 -23.21 16 14 C 0.03 1.10 5.13 86.78 0.45 1.54 16 15 C -0.10 -2.37 6.01 32.07 0.19 -2.18 16 16 C 0.01 0.29 0.87 -52.72 -0.05 0.25 16 17 C -0.12 -2.07 8.46 71.98 0.61 -1.46 16 18 C 0.24 9.02 11.71 89.44 1.05 10.06 16 19 N -0.50 -22.34 18.33 20.01 0.37 -21.97 16 20 C 0.06 1.98 5.59 86.65 0.48 2.46 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 3.04 5.95 -2.39 -0.01 3.03 16 25 H 0.03 1.34 7.34 -2.38 -0.02 1.32 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 28 H 0.03 1.22 5.58 -2.39 -0.01 1.21 16 29 H 0.13 2.10 8.02 -2.39 -0.02 2.08 16 30 H 0.08 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.11 1.21 8.11 -2.39 -0.02 1.19 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.03 1.10 6.90 -2.39 -0.02 1.08 16 35 H 0.12 2.90 7.82 -2.39 -0.02 2.88 16 Total: -1.00 -67.04 277.92 4.02 -63.02 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.07 Total: 0.15 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.28 Total: -14.56 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -3.35 Total: -97.60 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -67.04 4.02 -63.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693958751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.649 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds