Wall clock time and date at job start Sun Mar 29 2020 22:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99519 * 2 1 4 4 H 1.08008 * 119.99850 * 202.68271 * 3 2 1 5 5 C 1.38812 * 119.99982 * 22.67945 * 3 2 1 6 6 N 1.31620 * 120.00049 * 11.49432 * 5 3 2 7 7 Si 1.86805 * 119.99803 * 191.48935 * 5 3 2 8 8 H 1.48507 * 109.46922 * 90.00513 * 7 5 3 9 9 H 1.48501 * 109.46957 * 210.00164 * 7 5 3 10 10 H 1.48496 * 109.47467 * 330.00376 * 7 5 3 11 11 C 1.46499 * 120.00395 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47174 * 269.99882 * 11 2 1 13 13 H 1.09000 * 109.47120 * 305.00124 * 12 11 2 14 14 O 1.42908 * 109.47066 * 64.99696 * 12 11 2 15 15 C 1.50700 * 109.47159 * 184.99941 * 12 11 2 16 16 C 1.38229 * 119.61794 * 125.00300 * 15 12 11 17 17 C 1.38620 * 119.16093 * 180.02562 * 16 15 12 18 18 C 1.38671 * 118.42505 * 359.97438 * 17 16 15 19 19 C 1.38188 * 119.15843 * 0.27423 * 18 17 16 20 20 N 1.31849 * 119.61909 * 305.02267 * 15 12 11 21 21 H 1.08996 * 109.47059 * 273.92642 * 1 2 3 22 22 H 1.08998 * 109.47815 * 33.93589 * 1 2 3 23 23 H 1.09003 * 109.46751 * 153.93172 * 1 2 3 24 24 H 0.96999 * 119.99290 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.47103 * 150.00112 * 11 2 1 26 26 H 1.09001 * 109.46830 * 30.00350 * 11 2 1 27 27 H 0.96695 * 113.99314 * 60.00238 * 14 12 11 28 28 H 1.08005 * 120.41548 * 359.97438 * 16 15 12 29 29 H 1.08006 * 120.79150 * 180.02562 * 17 16 15 30 30 H 1.07999 * 120.42721 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.61309 * 179.69862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1670 1.2222 -0.3607 5 6 1.5359 2.3416 0.4635 6 7 0.3909 2.2655 1.1082 7 14 2.3352 4.0047 0.1724 8 1 1.8566 4.5651 -1.1169 9 1 1.9738 4.9279 1.2780 10 1 3.8106 3.8433 0.1247 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 1 2.9643 -0.9138 1.9810 14 8 1.2061 -1.9944 2.0805 15 6 3.3109 -2.9497 1.4429 16 6 4.4918 -2.9619 2.1613 17 6 5.2742 -4.1061 2.1554 18 6 4.8375 -5.2006 1.4243 19 6 3.6482 -5.1128 0.7262 20 7 2.9269 -4.0091 0.7584 21 1 -0.3633 0.0704 1.0252 22 1 -0.3635 0.8526 -0.5737 23 1 -0.3633 -0.9232 -0.4516 24 1 -0.0376 3.0731 1.4324 25 1 3.1500 -1.1380 -0.5143 26 1 1.6085 -2.0281 -0.5148 27 1 0.6957 -2.6956 1.6530 28 1 4.8012 -2.0905 2.7195 29 1 6.2015 -4.1447 2.7078 30 1 5.4215 -6.1087 1.3975 31 1 3.3036 -5.9591 0.1505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851746884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:12 Heat of formation + Delta-G solvation = 10.766958 kcal Electronic energy + Delta-G solvation = -15004.984482 eV Core-core repulsion = 12480.390691 eV Total energy + Delta-G solvation = -2524.593792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09803 -36.88005 -34.64350 -32.31781 -31.68729 -30.93248 -27.72160 -25.70855 -24.18047 -23.32604 -21.58036 -20.36612 -17.25570 -16.61838 -16.12224 -15.83213 -15.05074 -14.48062 -14.29347 -13.77477 -13.64003 -13.27965 -12.91473 -12.54428 -12.04916 -11.64035 -11.11098 -10.85676 -10.69700 -10.45609 -10.21710 -9.97793 -9.91359 -9.78605 -9.66048 -9.11454 -8.88475 -8.44962 -6.64392 -5.65482 -3.11177 1.22105 1.38923 3.41311 3.47181 3.48795 3.91900 4.45895 4.55442 4.85305 4.89917 5.15199 5.23310 5.30924 5.51270 5.60846 5.80624 5.86308 6.00958 6.17960 6.23939 6.32863 6.67457 6.76720 6.91049 6.92199 7.50490 7.83498 7.95349 8.15355 8.34439 8.46530 9.30398 9.93621 10.43541 11.38548 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.007102 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.290991 B = 3941.645796 C = 4255.930810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.592 5.592 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.134 3.866 12 C 0.133 3.867 13 H 0.110 0.890 14 O -0.540 6.540 15 C 0.110 3.890 16 C -0.162 4.162 17 C -0.078 4.078 18 C -0.187 4.187 19 C 0.097 3.903 20 N -0.477 5.477 21 H 0.035 0.965 22 H 0.040 0.960 23 H -0.006 1.006 24 H 0.252 0.748 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.365 0.635 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -13.009 0.670 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.313 5.313 3 C -0.389 4.389 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.005 3.995 12 C 0.070 3.930 13 H 0.128 0.872 14 O -0.343 6.343 15 C -0.029 4.029 16 C -0.183 4.183 17 C -0.104 4.104 18 C -0.207 4.207 19 C -0.061 4.061 20 N -0.188 5.188 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.012 0.988 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.211 0.789 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.571 -12.307 0.664 13.967 hybrid contribution 1.241 0.371 0.124 1.302 sum 7.812 -11.936 0.788 14.287 Atomic orbital electron populations 1.20790 0.82186 0.95147 0.99573 1.43925 1.02125 1.00232 1.85064 1.19234 0.98319 0.85534 1.35842 0.91466 1.25063 0.97761 0.98486 0.98233 1.70097 1.18022 1.26984 1.39450 0.86269 0.78778 0.84227 0.77324 1.21503 1.21731 1.20546 1.21428 0.96545 0.89096 0.92386 1.21966 0.82798 0.89103 0.99136 0.87246 1.86653 1.31799 1.59576 1.56223 1.22662 0.94027 0.95251 0.90919 1.22088 0.96147 0.99353 1.00672 1.21559 0.99048 0.92904 0.96883 1.22055 0.98737 0.99682 1.00239 1.22741 0.91321 0.95667 0.96340 1.67498 1.33554 0.99773 1.17947 0.94661 0.94089 0.98750 0.93776 0.93540 0.93080 0.78875 0.84730 0.85187 0.85288 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.33 8.61 59.85 0.52 4.84 16 2 N -0.59 -15.43 2.89 -181.12 -0.52 -15.95 16 3 C -0.26 -7.29 9.67 -15.06 -0.15 -7.43 16 4 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 5 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 6 N -0.90 -26.94 10.62 55.49 0.59 -26.35 16 7 Si 0.90 22.14 29.57 -169.99 -5.03 17.12 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.13 2.90 5.17 -4.05 -0.02 2.88 16 12 C 0.13 2.66 3.53 -27.89 -0.10 2.56 16 13 H 0.11 2.38 7.87 -51.93 -0.41 1.97 16 14 O -0.54 -11.29 12.88 -35.23 -0.45 -11.74 16 15 C 0.11 1.86 5.78 -82.59 -0.48 1.38 16 16 C -0.16 -2.36 9.71 -39.44 -0.38 -2.74 16 17 C -0.08 -0.92 10.17 -39.28 -0.40 -1.32 16 18 C -0.19 -2.07 10.11 -39.44 -0.40 -2.47 16 19 C 0.10 1.22 11.18 -17.55 -0.20 1.03 16 20 N -0.48 -7.62 9.96 -9.47 -0.09 -7.71 16 21 H 0.04 0.99 7.43 -51.93 -0.39 0.60 16 22 H 0.04 1.13 7.20 -51.93 -0.37 0.75 16 23 H -0.01 -0.14 7.85 -51.93 -0.41 -0.55 16 24 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.05 0.99 8.03 -51.93 -0.42 0.58 16 26 H 0.05 1.05 7.80 -51.93 -0.41 0.65 16 27 H 0.37 6.59 9.02 45.56 0.41 7.00 16 28 H 0.13 1.80 7.95 -52.48 -0.42 1.38 16 29 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 269.78 15.07 4.07 4.07 Total: -1.00 -32.05 269.78 -6.36 -38.41 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.22 Total: 3.42 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.69 Total: -1.26 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.03 Total: -50.01 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.45 Total: -11.74 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.05 -6.36 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851746884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.177 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds