Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99519 * 2 1 4 4 H 1.08008 * 119.99850 * 202.68271 * 3 2 1 5 5 C 1.38812 * 119.99982 * 22.67945 * 3 2 1 6 6 N 1.31620 * 120.00049 * 11.49432 * 5 3 2 7 7 Si 1.86805 * 119.99803 * 191.48935 * 5 3 2 8 8 H 1.48507 * 109.46922 * 90.00513 * 7 5 3 9 9 H 1.48501 * 109.46957 * 210.00164 * 7 5 3 10 10 H 1.48496 * 109.47467 * 330.00376 * 7 5 3 11 11 C 1.46499 * 120.00395 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47174 * 269.99882 * 11 2 1 13 13 H 1.09000 * 109.47120 * 305.00124 * 12 11 2 14 14 O 1.42908 * 109.47066 * 64.99696 * 12 11 2 15 15 C 1.50700 * 109.47159 * 184.99941 * 12 11 2 16 16 C 1.38229 * 119.61794 * 125.00300 * 15 12 11 17 17 C 1.38620 * 119.16093 * 180.02562 * 16 15 12 18 18 C 1.38671 * 118.42505 * 359.97438 * 17 16 15 19 19 C 1.38188 * 119.15843 * 0.27423 * 18 17 16 20 20 N 1.31849 * 119.61909 * 305.02267 * 15 12 11 21 21 H 1.08996 * 109.47059 * 273.92642 * 1 2 3 22 22 H 1.08998 * 109.47815 * 33.93589 * 1 2 3 23 23 H 1.09003 * 109.46751 * 153.93172 * 1 2 3 24 24 H 0.96999 * 119.99290 * 179.97438 * 6 5 3 25 25 H 1.09001 * 109.47103 * 150.00112 * 11 2 1 26 26 H 1.09001 * 109.46830 * 30.00350 * 11 2 1 27 27 H 0.96695 * 113.99314 * 60.00238 * 14 12 11 28 28 H 1.08005 * 120.41548 * 359.97438 * 16 15 12 29 29 H 1.08006 * 120.79150 * 180.02562 * 17 16 15 30 30 H 1.07999 * 120.42721 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.61309 * 179.69862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1670 1.2222 -0.3607 5 6 1.5359 2.3416 0.4635 6 7 0.3909 2.2655 1.1082 7 14 2.3352 4.0047 0.1724 8 1 1.8566 4.5651 -1.1169 9 1 1.9738 4.9279 1.2780 10 1 3.8106 3.8433 0.1247 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 1 2.9643 -0.9138 1.9810 14 8 1.2061 -1.9944 2.0805 15 6 3.3109 -2.9497 1.4429 16 6 4.4918 -2.9619 2.1613 17 6 5.2742 -4.1061 2.1554 18 6 4.8375 -5.2006 1.4243 19 6 3.6482 -5.1128 0.7262 20 7 2.9269 -4.0091 0.7584 21 1 -0.3633 0.0704 1.0252 22 1 -0.3635 0.8526 -0.5737 23 1 -0.3633 -0.9232 -0.4516 24 1 -0.0376 3.0731 1.4324 25 1 3.1500 -1.1380 -0.5143 26 1 1.6085 -2.0281 -0.5148 27 1 0.6957 -2.6956 1.6530 28 1 4.8012 -2.0905 2.7195 29 1 6.2015 -4.1447 2.7078 30 1 5.4215 -6.1087 1.3975 31 1 3.3036 -5.9591 0.1505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851746884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = -12.638249 kcal Electronic energy + Delta-G solvation = -15005.999408 eV Core-core repulsion = 12480.390691 eV Total energy + Delta-G solvation = -2525.608718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21439 -38.52403 -36.56155 -33.46109 -33.25251 -32.54539 -29.36765 -27.84217 -25.70942 -24.39340 -23.14670 -22.06027 -18.90184 -18.28622 -17.35105 -17.11415 -16.59793 -16.22436 -15.81195 -15.41583 -15.05306 -14.84925 -14.29630 -13.95466 -13.73249 -13.09115 -12.95586 -12.80084 -12.51390 -12.18862 -12.10083 -12.04946 -11.83080 -11.31390 -10.78486 -10.63401 -10.27017 -9.96046 -8.73214 -7.80919 -5.29970 0.17461 0.40561 1.46351 1.48098 1.56965 2.51083 2.85523 3.26554 3.34534 3.63869 3.72952 3.99713 4.07147 4.21207 4.28621 4.38559 4.55503 4.70605 4.86115 4.87282 4.92552 5.09796 5.29059 5.33955 5.34519 5.63010 5.79259 5.83364 6.33007 6.84410 7.07886 7.15610 7.86882 8.32269 9.22353 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.007102 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.290991 B = 3941.645796 C = 4255.930810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.270 4.270 4 H 0.071 0.929 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.285 1.285 9 H -0.294 1.294 10 H -0.267 1.267 11 C 0.139 3.861 12 C 0.145 3.855 13 H 0.082 0.918 14 O -0.560 6.560 15 C 0.084 3.916 16 C -0.176 4.176 17 C -0.074 4.074 18 C -0.169 4.169 19 C 0.086 3.914 20 N -0.501 5.501 21 H 0.006 0.994 22 H 0.014 0.986 23 H 0.024 0.976 24 H 0.247 0.753 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.376 0.624 28 H 0.135 0.865 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -14.968 0.378 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.333 5.333 3 C -0.400 4.400 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.582 5.582 7 Si 0.799 3.201 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.191 1.191 11 C 0.012 3.988 12 C 0.083 3.917 13 H 0.100 0.900 14 O -0.364 6.364 15 C -0.053 4.053 16 C -0.197 4.197 17 C -0.100 4.100 18 C -0.188 4.188 19 C -0.071 4.071 20 N -0.212 5.212 21 H 0.024 0.976 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.153 0.847 29 H 0.183 0.817 30 H 0.189 0.811 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.728 -14.305 0.363 16.761 hybrid contribution 0.650 0.768 0.201 1.026 sum 9.378 -13.537 0.564 16.478 Atomic orbital electron populations 1.20480 0.82540 0.95404 0.97557 1.44117 1.02266 1.01304 1.85597 1.19579 0.98532 0.86654 1.35205 0.91080 1.25867 0.98501 1.02040 0.98422 1.70282 1.19563 1.27456 1.40890 0.85207 0.78476 0.79559 0.76831 1.21168 1.22107 1.19115 1.21443 0.96114 0.87504 0.93736 1.21460 0.82936 0.90547 0.96779 0.90009 1.86601 1.32694 1.60294 1.56848 1.22013 0.94757 0.94767 0.93799 1.22201 0.95878 1.00875 1.00701 1.21983 0.99682 0.91754 0.96579 1.22547 0.97863 1.00695 0.97720 1.23354 0.91813 0.95289 0.96684 1.67379 1.34889 1.00500 1.18462 0.97586 0.96684 0.95728 0.94332 0.93512 0.92046 0.77660 0.84674 0.81684 0.81080 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.82 8.61 127.77 1.10 10.92 16 2 N -0.61 -32.45 2.89 -726.95 -2.10 -34.55 16 3 C -0.27 -15.39 9.67 84.03 0.81 -14.58 16 4 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 5 C -0.05 -3.08 5.12 84.86 0.43 -2.64 16 6 N -0.94 -57.69 10.62 21.65 0.23 -57.46 16 7 Si 0.97 46.19 29.57 68.60 2.03 48.21 16 8 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.14 6.08 5.17 86.38 0.45 6.53 16 12 C 0.15 5.94 3.53 29.85 0.11 6.05 16 13 H 0.08 3.74 7.87 -2.39 -0.02 3.72 16 14 O -0.56 -24.03 12.88 -148.98 -1.92 -25.95 16 15 C 0.08 2.80 5.78 42.55 0.25 3.05 16 16 C -0.18 -4.89 9.71 22.36 0.22 -4.67 16 17 C -0.07 -1.47 10.17 22.46 0.23 -1.24 16 18 C -0.17 -2.94 10.11 22.36 0.23 -2.72 16 19 C 0.09 1.89 11.18 84.67 0.95 2.83 16 20 N -0.50 -15.22 9.96 -183.88 -1.83 -17.05 16 21 H 0.01 0.34 7.43 -2.39 -0.02 0.32 16 22 H 0.01 0.83 7.20 -2.39 -0.02 0.81 16 23 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 24 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 26 H 0.06 2.52 7.80 -2.39 -0.02 2.50 16 27 H 0.38 13.81 9.02 -74.06 -0.67 13.14 16 28 H 0.14 3.58 7.95 -2.91 -0.02 3.55 16 29 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -70.75 269.78 1.63 -69.12 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.46 Total: 14.16 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.76 Total: 3.52 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.70 Total: -109.07 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.92 Total: -25.95 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -70.75 1.63 -69.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851746884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.482 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds