Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46953 * 158.23922 * 3 2 1 5 5 C 1.36937 * 119.99655 * 263.92620 * 4 3 2 6 6 H 1.07996 * 119.99743 * 199.08162 * 5 4 3 7 7 C 1.38815 * 119.99914 * 19.08479 * 5 4 3 8 8 N 1.31620 * 120.00024 * 22.53002 * 7 5 4 9 9 Si 1.86801 * 119.99691 * 202.52354 * 7 5 4 10 10 H 1.48498 * 109.46948 * 90.00311 * 9 7 5 11 11 H 1.48503 * 109.46851 * 210.00347 * 9 7 5 12 12 H 1.48503 * 109.47268 * 330.00037 * 9 7 5 13 13 C 1.46499 * 119.99836 * 83.92675 * 4 3 2 14 14 C 1.52998 * 109.47058 * 90.00352 * 13 4 3 15 15 H 1.08994 * 110.88433 * 308.80563 * 14 13 4 16 16 C 1.54683 * 111.08615 * 72.66877 * 14 13 4 17 17 N 1.46766 * 105.53675 * 143.37456 * 16 14 13 18 18 C 1.34423 * 111.29655 * 343.07965 * 17 16 14 19 19 O 1.21287 * 124.94087 * 180.37392 * 18 17 16 20 20 C 1.51274 * 110.11688 * 0.40160 * 18 17 16 21 21 H 4.40641 * 5.51288 * 179.97438 * 4 1 2 22 22 H 1.08993 * 109.47431 * 38.23900 * 3 2 1 23 23 H 1.08997 * 109.46990 * 278.23524 * 3 2 1 24 24 H 0.97000 * 119.99653 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.47270 * 329.99526 * 13 4 3 26 26 H 1.09006 * 109.46589 * 209.99752 * 13 4 3 27 27 H 1.09003 * 110.14407 * 24.39677 * 16 14 13 28 28 H 1.08998 * 110.36893 * 262.47481 * 16 14 13 29 29 H 0.96997 * 124.35350 * 163.04804 * 17 16 14 30 30 H 1.09003 * 110.48902 * 134.93517 * 20 18 17 31 31 H 1.09005 * 110.49048 * 257.44451 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2837 -0.5121 5 6 3.4802 1.4073 -1.8311 6 1 4.1142 2.2218 -2.1489 7 6 3.0164 0.4857 -2.7598 8 7 1.9329 -0.2169 -2.5052 9 14 3.9300 0.2428 -4.3710 10 1 4.9571 -0.8165 -4.2027 11 1 2.9694 -0.1626 -5.4284 12 1 4.5897 1.5143 -4.7626 13 6 3.2508 2.4344 0.3870 14 6 4.6441 2.4482 1.0189 15 1 4.8809 1.4794 1.4586 16 6 5.7189 2.8649 -0.0125 17 7 6.6896 3.6724 0.7356 18 6 6.1780 4.0901 1.9064 19 8 6.7646 4.7780 2.7149 20 6 4.7643 3.5768 2.0691 21 1 -1.0501 -0.0005 0.0000 22 1 3.0097 -0.8063 -0.6360 23 1 3.0094 -0.1464 1.0170 24 1 1.6087 -0.8606 -3.1544 25 1 2.4969 2.3612 1.1709 26 1 3.0991 3.3540 -0.1783 27 1 5.2666 3.4590 -0.8067 28 1 6.2046 1.9836 -0.4314 29 1 7.5854 3.8778 0.4254 30 1 4.6155 3.1806 3.0736 31 1 4.0446 4.3689 1.8620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852010542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = 41.240809 kcal Electronic energy + Delta-G solvation = -15051.904717 eV Core-core repulsion = 12528.632371 eV Total energy + Delta-G solvation = -2523.272346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95492 -36.87267 -35.44092 -32.25973 -31.60416 -30.27742 -27.47668 -26.00213 -25.44384 -21.97009 -20.32025 -19.89247 -17.52132 -17.08456 -16.57103 -15.61439 -15.01820 -14.66008 -13.95069 -13.78030 -13.21286 -13.19920 -13.04897 -12.73525 -12.00490 -11.70696 -11.25260 -11.18371 -10.87143 -10.70618 -10.40574 -10.27051 -10.02693 -9.65017 -8.97794 -8.83463 -8.78857 -8.49792 -7.06060 -5.85965 -3.29358 2.81917 3.31262 3.38628 3.40905 3.65835 4.10418 4.34368 4.47048 4.72289 4.88679 5.13044 5.31707 5.43358 5.71254 5.80105 5.86164 5.88723 6.08734 6.21245 6.29413 6.49564 6.63512 6.77936 7.02369 7.14284 7.23171 7.37449 7.68137 8.21334 8.47047 9.02555 9.15528 9.69885 10.16713 11.17159 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.008910 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.592662 B = 3141.797131 C = 4014.044834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.098 4.098 3 C 0.268 3.732 4 N -0.585 5.585 5 C -0.270 4.270 6 H 0.077 0.923 7 C 0.006 3.994 8 N -0.884 5.884 9 Si 0.897 3.103 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.157 3.843 14 C -0.115 4.115 15 H 0.085 0.915 16 C 0.112 3.888 17 N -0.734 5.734 18 C 0.518 3.482 19 O -0.555 6.555 20 C -0.153 4.153 21 H 0.190 0.810 22 H 0.092 0.908 23 H 0.038 0.962 24 H 0.255 0.745 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.404 0.596 30 H 0.096 0.904 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 2.568 4.763 6.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.101 4.101 3 C 0.143 3.857 4 N -0.305 5.305 5 C -0.398 4.398 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.526 5.526 9 Si 0.726 3.274 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.029 3.971 14 C -0.136 4.136 15 H 0.103 0.897 16 C -0.011 4.011 17 N -0.388 5.388 18 C 0.305 3.695 19 O -0.434 6.434 20 C -0.193 4.193 21 H 0.207 0.793 22 H 0.110 0.890 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.241 0.759 30 H 0.114 0.886 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.080 2.771 5.069 7.073 hybrid contribution 0.404 -0.177 -1.372 1.441 sum 4.484 2.594 3.697 6.364 Atomic orbital electron populations 1.24200 0.95375 1.04214 1.08041 1.24290 0.95343 0.96688 0.93797 1.17742 0.82825 0.89818 0.95347 1.44056 1.74822 1.05211 1.06407 1.19172 1.25026 1.12501 0.83140 0.90568 1.24946 0.96013 1.00746 0.97667 1.70139 1.19307 1.27392 1.35748 0.86390 0.79348 0.78146 0.83477 1.21413 1.21952 1.20504 1.20774 0.91410 0.91650 0.93243 1.22968 0.99022 0.97452 0.94199 0.89696 1.22262 0.89422 0.94989 0.94448 1.46443 1.17338 1.54147 1.20858 1.21047 0.89075 0.78508 0.80854 1.90702 1.66976 1.39552 1.46171 1.22381 0.94697 1.00384 1.01884 0.79314 0.89010 0.94453 0.93478 0.93530 0.92788 0.90662 0.89933 0.75909 0.88593 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.58 19.25 29.55 0.57 -6.01 16 2 C -0.10 -2.27 11.51 -37.12 -0.43 -2.70 16 3 C 0.27 5.84 5.41 -6.83 -0.04 5.80 16 4 N -0.59 -12.67 2.47 -176.57 -0.44 -13.10 16 5 C -0.27 -6.47 9.09 -15.06 -0.14 -6.60 16 6 H 0.08 1.76 6.84 -52.49 -0.36 1.40 16 7 C 0.01 0.16 4.82 -17.43 -0.08 0.08 16 8 N -0.88 -23.88 9.61 55.49 0.53 -23.35 16 9 Si 0.90 20.22 29.61 -169.99 -5.03 15.18 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 C 0.16 2.74 5.06 -4.04 -0.02 2.72 16 14 C -0.11 -1.66 3.38 -88.88 -0.30 -1.97 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.11 1.60 6.51 -3.01 -0.02 1.58 16 17 N -0.73 -9.92 6.24 -59.09 -0.37 -10.29 16 18 C 0.52 8.02 8.43 -10.86 -0.09 7.93 16 19 O -0.56 -10.51 18.03 5.55 0.10 -10.41 16 20 C -0.15 -2.03 6.41 -26.74 -0.17 -2.20 16 21 H 0.19 3.49 7.80 -54.08 -0.42 3.07 16 22 H 0.09 2.20 6.57 -51.93 -0.34 1.86 16 23 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.05 0.96 7.82 -51.93 -0.41 0.55 16 27 H 0.08 1.13 6.97 -51.93 -0.36 0.77 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.40 4.73 8.96 -40.82 -0.37 4.36 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 LS Contribution 268.95 15.07 4.05 4.05 Total: -1.00 -29.47 268.95 -5.78 -35.25 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.91 Total: 4.04 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.72 Total: -1.38 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.27 Total: -46.74 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.10 Total: -10.41 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.47 -5.78 -35.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852010542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.494 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds