Wall clock time and date at job start Sun Mar 29 2020 21:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46953 * 158.23922 * 3 2 1 5 5 C 1.36937 * 119.99655 * 263.92620 * 4 3 2 6 6 H 1.07996 * 119.99743 * 199.08162 * 5 4 3 7 7 C 1.38815 * 119.99914 * 19.08479 * 5 4 3 8 8 N 1.31620 * 120.00024 * 22.53002 * 7 5 4 9 9 Si 1.86801 * 119.99691 * 202.52354 * 7 5 4 10 10 H 1.48498 * 109.46948 * 90.00311 * 9 7 5 11 11 H 1.48503 * 109.46851 * 210.00347 * 9 7 5 12 12 H 1.48503 * 109.47268 * 330.00037 * 9 7 5 13 13 C 1.46499 * 119.99836 * 83.92675 * 4 3 2 14 14 C 1.52998 * 109.47058 * 90.00352 * 13 4 3 15 15 H 1.08994 * 110.88433 * 308.80563 * 14 13 4 16 16 C 1.54683 * 111.08615 * 72.66877 * 14 13 4 17 17 N 1.46766 * 105.53675 * 143.37456 * 16 14 13 18 18 C 1.34423 * 111.29655 * 343.07965 * 17 16 14 19 19 O 1.21287 * 124.94087 * 180.37392 * 18 17 16 20 20 C 1.51274 * 110.11688 * 0.40160 * 18 17 16 21 21 H 4.40641 * 5.51288 * 179.97438 * 4 1 2 22 22 H 1.08993 * 109.47431 * 38.23900 * 3 2 1 23 23 H 1.08997 * 109.46990 * 278.23524 * 3 2 1 24 24 H 0.97000 * 119.99653 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.47270 * 329.99526 * 13 4 3 26 26 H 1.09006 * 109.46589 * 209.99752 * 13 4 3 27 27 H 1.09003 * 110.14407 * 24.39677 * 16 14 13 28 28 H 1.08998 * 110.36893 * 262.47481 * 16 14 13 29 29 H 0.96997 * 124.35350 * 163.04804 * 17 16 14 30 30 H 1.09003 * 110.48902 * 134.93517 * 20 18 17 31 31 H 1.09005 * 110.49048 * 257.44451 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2837 -0.5121 5 6 3.4802 1.4073 -1.8311 6 1 4.1142 2.2218 -2.1489 7 6 3.0164 0.4857 -2.7598 8 7 1.9329 -0.2169 -2.5052 9 14 3.9300 0.2428 -4.3710 10 1 4.9571 -0.8165 -4.2027 11 1 2.9694 -0.1626 -5.4284 12 1 4.5897 1.5143 -4.7626 13 6 3.2508 2.4344 0.3870 14 6 4.6441 2.4482 1.0189 15 1 4.8809 1.4794 1.4586 16 6 5.7189 2.8649 -0.0125 17 7 6.6896 3.6724 0.7356 18 6 6.1780 4.0901 1.9064 19 8 6.7646 4.7780 2.7149 20 6 4.7643 3.5768 2.0691 21 1 -1.0501 -0.0005 0.0000 22 1 3.0097 -0.8063 -0.6360 23 1 3.0094 -0.1464 1.0170 24 1 1.6087 -0.8606 -3.1544 25 1 2.4969 2.3612 1.1709 26 1 3.0991 3.3540 -0.1783 27 1 5.2666 3.4590 -0.8067 28 1 6.2046 1.9836 -0.4314 29 1 7.5854 3.8778 0.4254 30 1 4.6155 3.1806 3.0736 31 1 4.0446 4.3689 1.8620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852010542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:31 Heat of formation + Delta-G solvation = 22.009604 kcal Electronic energy + Delta-G solvation = -15052.738645 eV Core-core repulsion = 12528.632371 eV Total energy + Delta-G solvation = -2524.106274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17469 -38.35105 -36.92255 -33.74298 -33.36518 -31.78331 -28.78855 -27.73043 -26.88623 -23.59130 -21.47967 -21.21190 -19.26359 -18.33549 -18.14775 -17.07886 -16.64286 -15.87756 -15.57257 -15.38136 -14.81860 -14.62133 -14.34820 -13.93285 -13.40074 -13.34226 -12.96366 -12.67963 -12.58028 -12.10935 -12.06361 -11.82845 -11.56058 -10.97883 -10.70390 -10.57998 -10.25908 -10.01688 -8.83234 -7.75447 -5.17348 1.52273 1.56221 1.61011 1.61465 2.38032 2.53757 2.58990 2.66087 3.35462 3.56836 3.63368 3.92309 4.13950 4.20209 4.34515 4.71449 4.76910 4.85094 4.95816 4.98182 5.09360 5.21994 5.36836 5.50438 5.71855 5.79195 5.89689 6.08883 6.37618 7.18272 7.30529 7.42544 7.92126 8.35489 9.26013 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.008910 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.592662 B = 3141.797131 C = 4014.044834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.131 4.131 3 C 0.269 3.731 4 N -0.597 5.597 5 C -0.256 4.256 6 H 0.086 0.914 7 C -0.047 4.047 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.289 1.289 11 H -0.310 1.310 12 H -0.269 1.269 13 C 0.158 3.842 14 C -0.103 4.103 15 H 0.088 0.912 16 C 0.116 3.884 17 N -0.722 5.722 18 C 0.515 3.485 19 O -0.592 6.592 20 C -0.142 4.142 21 H 0.217 0.783 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.243 0.757 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.413 0.587 30 H 0.112 0.888 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 3.247 5.328 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.133 4.133 3 C 0.144 3.856 4 N -0.316 5.316 5 C -0.385 4.385 6 H 0.104 0.896 7 C -0.243 4.243 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.216 1.216 11 H -0.238 1.238 12 H -0.194 1.194 13 C 0.032 3.968 14 C -0.124 4.124 15 H 0.106 0.894 16 C -0.007 4.007 17 N -0.375 5.375 18 C 0.303 3.697 19 O -0.474 6.474 20 C -0.183 4.183 21 H 0.234 0.766 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.130 0.870 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.569 3.472 5.634 8.042 hybrid contribution 0.254 -0.343 -1.512 1.571 sum 4.824 3.130 4.122 7.075 Atomic orbital electron populations 1.24985 0.96441 1.03282 1.07227 1.24801 0.96317 0.97609 0.94614 1.17725 0.82439 0.89177 0.96296 1.44237 1.74741 1.06425 1.06241 1.19511 1.23373 1.11556 0.84088 0.89646 1.25525 0.96911 1.01663 1.00244 1.70289 1.20960 1.28501 1.36227 0.85532 0.77866 0.78150 0.80433 1.21609 1.23780 1.19380 1.20878 0.93215 0.89946 0.92738 1.22712 0.97088 0.98232 0.94406 0.89353 1.22177 0.89443 0.94893 0.94214 1.46379 1.17686 1.53259 1.20193 1.21357 0.89714 0.77975 0.80703 1.90691 1.67960 1.41382 1.47405 1.22355 0.93583 1.00071 1.02282 0.76628 0.91750 0.91357 0.94750 0.92767 0.93052 0.91122 0.89918 0.74857 0.87001 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.87 19.25 74.32 1.43 -11.43 16 2 C -0.13 -5.94 11.51 31.13 0.36 -5.58 16 3 C 0.27 11.48 5.41 84.57 0.46 11.94 16 4 N -0.60 -24.89 2.47 -712.55 -1.76 -26.65 16 5 C -0.26 -11.92 9.09 84.03 0.76 -11.16 16 6 H 0.09 3.77 6.84 -2.91 -0.02 3.75 16 7 C -0.05 -2.38 4.82 84.86 0.41 -1.97 16 8 N -0.91 -49.87 9.61 21.65 0.21 -49.66 16 9 Si 0.95 41.59 29.61 68.60 2.03 43.62 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.16 5.14 5.06 86.38 0.44 5.58 16 14 C -0.10 -2.70 3.38 -9.67 -0.03 -2.73 16 15 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 16 C 0.12 3.02 6.51 86.90 0.57 3.58 16 17 N -0.72 -17.82 6.24 -459.45 -2.87 -20.69 16 18 C 0.51 14.76 8.43 87.89 0.74 15.51 16 19 O -0.59 -21.52 18.03 -3.05 -0.05 -21.58 16 20 C -0.14 -3.35 6.41 30.59 0.20 -3.16 16 21 H 0.22 7.57 7.80 -4.41 -0.03 7.54 16 22 H 0.06 3.10 6.57 -2.39 -0.02 3.09 16 23 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 24 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 25 H 0.05 1.70 8.07 -2.39 -0.02 1.68 16 26 H 0.05 1.70 7.82 -2.38 -0.02 1.68 16 27 H 0.07 1.94 6.97 -2.39 -0.02 1.93 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.41 8.77 8.96 -92.71 -0.83 7.94 16 30 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.11 2.46 7.90 -2.38 -0.02 2.44 16 Total: -1.00 -61.70 268.95 3.18 -58.52 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.30 Total: 15.87 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.33 Total: 0.56 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.42 Total: -97.00 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -61.70 3.18 -58.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852010542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.528 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds