Wall clock time and date at job start Sun Mar 29 2020 22:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36554 * 125.98478 * 144.11918 * 3 2 1 5 5 C 1.40475 * 106.70393 * 179.97438 * 4 3 2 6 6 C 1.35046 * 107.11194 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.61823 * 180.02562 * 6 5 4 8 8 S 1.81398 * 109.46845 * 89.99945 * 7 6 5 9 9 C 1.81404 * 103.00133 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47497 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00136 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00242 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00158 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47487 * 60.00100 * 14 12 10 16 16 H 1.48501 * 109.47486 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47103 * 300.00360 * 14 12 10 18 18 O 1.34056 * 108.76743 * 359.97438 * 6 5 4 19 19 H 1.07995 * 126.64402 * 0.23699 * 4 3 2 20 20 H 1.08001 * 126.44036 * 179.97438 * 5 4 3 21 21 H 1.08993 * 109.47244 * 209.99873 * 7 6 5 22 22 H 1.08997 * 109.46920 * 330.00427 * 7 6 5 23 23 H 1.09002 * 109.46797 * 300.00372 * 9 8 7 24 24 H 1.09002 * 109.47196 * 59.99575 * 9 8 7 25 25 H 0.97002 * 119.99897 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3700 0.8963 -0.6476 5 6 4.6961 0.5214 -0.3753 6 6 4.6455 -0.5715 0.4164 7 6 5.8368 -1.3183 0.9588 8 16 6.3132 -0.6145 2.5614 9 6 7.7387 -1.6271 3.0442 10 6 8.2583 -1.1591 4.3791 11 1 7.7786 -0.3352 4.8866 12 6 9.3453 -1.7834 4.9532 13 7 9.9291 -2.7870 4.3355 14 14 9.9889 -1.2038 6.6082 15 1 8.9188 -1.3360 7.6294 16 1 11.1559 -2.0326 7.0035 17 1 10.4038 0.2185 6.5074 18 8 3.3609 -0.8820 0.6413 19 1 3.0472 1.7333 -1.2488 20 1 5.5883 1.0145 -0.7320 21 1 5.5795 -2.3698 1.0858 22 1 6.6695 -1.2297 0.2611 23 1 7.4342 -2.6710 3.1189 24 1 8.5238 -1.5305 2.2942 25 1 10.6941 -3.2260 4.7392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871675349.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:26 Heat of formation + Delta-G solvation = 37.866227 kcal Electronic energy + Delta-G solvation = -11675.183747 eV Core-core repulsion = 9360.966182 eV Total energy + Delta-G solvation = -2314.217565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.82877 -36.82097 -33.46595 -33.22375 -32.13899 -28.66286 -27.52582 -23.25011 -22.42168 -21.51756 -19.44044 -16.82029 -16.53361 -15.83639 -15.13215 -14.56182 -14.32348 -13.98505 -13.57732 -13.36665 -13.11146 -12.84874 -12.67664 -12.49019 -12.29055 -11.90366 -10.89837 -10.84646 -10.32814 -10.10347 -9.70692 -9.06088 -8.67573 -8.49334 -6.87119 -6.26287 -4.31203 0.77843 1.78923 1.96192 2.75229 2.85401 3.12408 3.24811 3.28261 3.32261 3.62900 3.93763 4.30318 4.62930 4.70557 5.11170 5.22170 5.42537 5.48029 5.70772 5.74839 6.21313 6.82493 6.97884 6.99455 7.10148 7.67719 7.91682 8.70218 9.32493 10.84729 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.065519 B = 0.004799 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.252917 B = 5833.574838 C = 5972.072279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.298 3.702 3 C 0.021 3.979 4 C -0.112 4.112 5 C -0.204 4.204 6 C 0.070 3.930 7 C -0.030 4.030 8 S -0.280 6.280 9 C 0.089 3.911 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.067 3.933 13 N -0.892 5.892 14 Si 0.908 3.092 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.273 1.273 18 O -0.149 6.149 19 H 0.163 0.837 20 H 0.164 0.836 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 4.490 -9.908 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.017 4.017 3 C -0.032 4.032 4 C -0.134 4.134 5 C -0.226 4.226 6 C 0.016 3.984 7 C -0.177 4.177 8 S -0.052 6.052 9 C -0.057 4.057 10 C -0.555 4.555 11 H 0.086 0.914 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.735 3.265 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 O -0.043 6.043 19 H 0.180 0.820 20 H 0.182 0.818 21 H 0.116 0.884 22 H 0.131 0.869 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.590 4.902 -9.145 14.130 hybrid contribution 1.474 -0.745 0.190 1.662 sum -8.117 4.157 -8.955 12.781 Atomic orbital electron populations 1.81317 1.10598 1.06853 1.08197 1.23571 0.89658 0.94416 0.94013 1.16402 0.84321 0.96586 1.05931 1.21886 0.92007 0.99327 1.00227 1.21563 0.98270 0.98523 1.04219 1.22107 0.81752 0.97021 0.97502 1.21815 0.93441 1.01666 1.00729 1.87076 1.45780 1.52526 1.19866 1.21146 0.89260 0.95242 1.00094 1.20595 1.14219 1.17977 1.02674 0.91441 1.24953 0.95914 0.94655 0.98229 1.69933 1.22123 1.21985 1.38928 0.86386 0.78355 0.78843 0.82934 1.19868 1.21015 1.19850 1.84076 1.16254 1.46263 1.57705 0.81959 0.81808 0.88398 0.86903 0.94299 0.94210 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.41 18.54 41.84 0.78 -4.63 15 2 C 0.30 3.72 15.89 -22.47 -0.36 3.36 15 3 C 0.02 0.25 7.08 -38.26 -0.27 -0.02 15 4 C -0.11 -1.12 10.84 -39.35 -0.43 -1.54 15 5 C -0.20 -2.27 10.77 -39.87 -0.43 -2.70 15 6 C 0.07 0.95 6.57 -35.44 -0.23 0.72 15 7 C -0.03 -0.44 6.47 36.01 0.23 -0.20 15 8 S -0.28 -5.66 21.64 -107.50 -2.33 -7.98 15 9 C 0.09 2.17 5.70 36.00 0.21 2.38 15 10 C -0.52 -13.96 9.13 -34.44 -0.31 -14.27 15 11 H 0.07 1.83 7.71 -52.48 -0.40 1.43 15 12 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 13 N -0.89 -25.03 13.29 55.43 0.74 -24.29 15 14 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 15 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 18 O -0.15 -2.11 10.67 4.79 0.05 -2.06 15 19 H 0.16 1.10 8.06 -52.49 -0.42 0.68 15 20 H 0.16 1.49 8.06 -52.49 -0.42 1.07 15 21 H 0.10 1.39 8.14 -51.93 -0.42 0.96 15 22 H 0.11 1.44 8.14 -51.93 -0.42 1.02 15 23 H 0.04 0.98 8.14 -51.92 -0.42 0.56 15 24 H 0.04 0.99 8.14 -51.92 -0.42 0.56 15 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 257.59 15.07 3.88 3.88 Total: -1.00 -28.76 257.59 -5.67 -34.43 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -2.08 Total: -4.54 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.69 Total: -10.57 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 1.51 Total: -28.92 kcal Atomic # 8 Polarization: -2.11 SS G_CDS: 0.05 Total: -2.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -2.33 Total: -7.98 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.76 -5.67 -34.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871675349.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.292 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds