Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34085 * 126.36135 * 2 1 4 4 N 1.34732 * 107.79127 * 180.02562 * 3 2 1 5 5 C 1.31048 * 108.60467 * 359.97438 * 4 3 2 6 6 N 1.38158 * 125.71444 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47205 * 186.12139 * 7 6 5 9 9 C 1.50701 * 115.55271 * 40.11918 * 8 7 6 10 10 H 1.07996 * 119.99848 * 264.89892 * 9 8 7 11 11 C 1.37878 * 119.99647 * 84.89005 * 9 8 7 12 12 N 1.31516 * 120.00313 * 351.94903 * 11 9 8 13 13 Si 1.86799 * 119.99856 * 171.94011 * 11 9 8 14 14 H 1.48502 * 109.46965 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47009 * 120.00278 * 13 11 9 16 16 H 1.48500 * 109.47510 * 240.00460 * 13 11 9 17 17 C 1.53005 * 117.49859 * 254.41433 * 8 7 6 18 18 C 1.52996 * 60.00057 * 252.50861 * 17 8 7 19 19 O 1.34211 * 108.57643 * 0.23751 * 5 4 3 20 20 H 1.09000 * 109.47166 * 90.00294 * 1 2 3 21 21 H 1.08998 * 109.47242 * 210.00634 * 1 2 3 22 22 H 1.09008 * 109.47152 * 330.00297 * 1 2 3 23 23 H 1.08003 * 126.10665 * 359.97438 * 3 2 1 24 24 H 0.96996 * 120.00158 * 180.02562 * 6 5 4 25 25 H 1.09002 * 109.46551 * 66.12177 * 7 6 5 26 26 H 1.08996 * 109.47309 * 306.12343 * 7 6 5 27 27 H 0.96993 * 120.00077 * 185.00983 * 12 11 9 28 28 H 1.08999 * 117.49585 * 359.97438 * 17 8 7 29 29 H 1.08997 * 117.49886 * 145.01939 * 17 8 7 30 30 H 1.08998 * 117.50148 * 252.51316 * 18 17 8 31 31 H 1.09002 * 117.51987 * 107.47852 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3019 1.0798 0.0000 4 7 3.5791 0.6507 -0.0006 5 6 3.5799 -0.6598 -0.0004 6 7 4.7021 -1.4656 -0.0013 7 6 6.0371 -0.8622 -0.0021 8 6 7.0925 -1.9590 -0.1569 9 6 6.7505 -3.0575 -1.1303 10 1 6.2985 -3.9719 -0.7755 11 6 7.0144 -2.8948 -2.4737 12 7 7.4156 -1.7279 -2.9286 13 14 6.8024 -4.3321 -3.6479 14 1 6.3444 -5.5254 -2.8919 15 1 5.7934 -3.9833 -4.6802 16 1 8.1003 -4.6301 -4.3051 17 6 7.9016 -2.3411 1.0843 18 6 8.5616 -1.5468 -0.0446 19 8 2.3080 -1.0881 -0.0049 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5138 23 1 1.9766 2.1096 -0.0004 24 1 4.6062 -2.4308 -0.0014 25 1 6.1974 -0.3337 0.9376 26 1 6.1182 -0.1603 -0.8321 27 1 7.5314 -1.5927 -3.8820 28 1 7.6823 -1.8106 2.0109 29 1 8.1866 -3.3871 1.1970 30 1 9.2808 -2.0702 -0.6746 31 1 8.7763 -0.4940 0.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884494698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = 49.752323 kcal Electronic energy + Delta-G solvation = -14881.597317 eV Core-core repulsion = 12358.694057 eV Total energy + Delta-G solvation = -2522.903260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.48305 -37.18704 -34.51645 -33.78652 -32.04021 -31.34725 -26.72532 -25.44195 -24.78301 -21.54374 -21.19995 -20.57100 -19.30908 -17.36346 -16.23674 -16.13651 -14.87472 -14.75739 -14.44297 -13.75106 -13.42543 -13.08535 -12.88518 -12.81288 -12.37114 -11.96423 -11.63843 -11.06566 -10.99682 -10.71467 -10.54739 -10.28064 -9.73492 -9.61046 -9.42033 -8.92673 -8.53836 -8.18873 -6.95572 -6.12936 -4.21993 2.21176 2.76339 3.22465 3.31877 3.34055 3.50289 4.26007 4.32929 5.15480 5.20806 5.23487 5.36245 5.57530 5.62525 5.70462 6.00925 6.05268 6.27351 6.44775 6.49928 6.61737 6.67194 6.71921 6.91969 7.05477 7.30858 7.40103 7.74132 7.77529 8.08847 8.28929 8.79392 8.81101 9.45691 10.94684 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.008241 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.717937 B = 3396.703009 C = 3986.966043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.121 4.121 3 C -0.002 4.002 4 N -0.556 5.556 5 C 0.472 3.528 6 N -0.652 5.652 7 C 0.190 3.810 8 C 0.025 3.975 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.078 3.922 12 N -0.869 5.869 13 Si 0.889 3.111 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.282 1.282 17 C -0.210 4.210 18 C -0.148 4.148 19 O -0.235 6.235 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.172 0.828 24 H 0.417 0.583 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 2.260 4.954 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.175 4.175 3 C -0.140 4.140 4 N -0.297 5.297 5 C 0.173 3.827 6 N -0.299 5.299 7 C 0.068 3.932 8 C 0.024 3.976 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.127 4.127 12 N -0.504 5.504 13 Si 0.716 3.284 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.247 4.247 18 C -0.186 4.186 19 O -0.125 6.125 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.190 0.810 24 H 0.256 0.744 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.695 2.779 4.783 9.477 hybrid contribution -0.690 -1.461 -0.869 1.835 sum -8.385 1.319 3.914 9.347 Atomic orbital electron populations 1.19987 0.85057 1.03094 1.02575 1.22627 0.93894 0.84124 1.16878 1.22735 0.88114 0.99408 1.03754 1.70902 1.21774 1.06158 1.30861 1.21909 0.79842 0.86957 0.94027 1.43705 0.99852 1.07693 1.78635 1.20912 0.77880 0.95280 0.99144 1.19037 0.88786 0.95592 0.94190 1.20321 1.42680 1.00408 0.90948 0.92020 1.24981 0.93985 0.95522 0.98253 1.69979 1.44595 1.21986 1.13832 0.86595 0.77824 0.82912 0.81050 1.19623 1.21048 1.20820 1.23108 1.09339 0.99641 0.92638 1.22504 0.98212 0.97505 1.00417 1.84320 1.16559 1.36665 1.74914 0.91126 0.91403 0.89970 0.81041 0.74450 0.94574 0.91010 0.92819 0.91439 0.90278 0.89802 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.43 36.00 0.38 -0.17 16 2 C -0.12 -1.98 7.38 -35.77 -0.26 -2.24 16 3 C 0.00 -0.03 11.79 -17.74 -0.21 -0.24 16 4 N -0.56 -11.73 10.94 -14.45 -0.16 -11.89 16 5 C 0.47 10.01 9.05 -87.00 -0.79 9.22 16 6 N -0.65 -14.02 5.42 -62.30 -0.34 -14.35 16 7 C 0.19 4.29 6.05 -4.04 -0.02 4.26 16 8 C 0.02 0.58 1.69 -155.66 -0.26 0.32 16 9 C -0.51 -12.89 7.53 -34.44 -0.26 -13.15 16 10 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 11 C 0.08 2.05 5.38 -17.82 -0.10 1.95 16 12 N -0.87 -23.96 12.99 55.43 0.72 -23.24 16 13 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.21 -4.34 9.88 -26.73 -0.26 -4.60 16 18 C -0.15 -3.33 9.52 -26.73 -0.25 -3.58 16 19 O -0.24 -4.59 10.80 3.67 0.04 -4.55 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.17 2.28 8.06 -52.48 -0.42 1.86 16 24 H 0.42 8.67 7.71 -40.82 -0.31 8.36 16 25 H 0.04 0.77 7.95 -51.93 -0.41 0.36 16 26 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 28 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 274.65 15.07 4.14 4.14 Total: -1.00 -28.90 274.65 -6.74 -35.64 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.08 Total: 6.96 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.05 Total: -8.23 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.22 Total: -49.48 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.04 Total: -4.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.90 -6.74 -35.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884494698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.390 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds