Wall clock time and date at job start Sun Mar 29 2020 21:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34085 * 126.36135 * 2 1 4 4 N 1.34732 * 107.79127 * 180.02562 * 3 2 1 5 5 C 1.31048 * 108.60467 * 359.97438 * 4 3 2 6 6 N 1.38158 * 125.71444 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47205 * 186.12139 * 7 6 5 9 9 C 1.50701 * 115.55271 * 40.11918 * 8 7 6 10 10 H 1.07996 * 119.99848 * 264.89892 * 9 8 7 11 11 C 1.37878 * 119.99647 * 84.89005 * 9 8 7 12 12 N 1.31516 * 120.00313 * 351.94903 * 11 9 8 13 13 Si 1.86799 * 119.99856 * 171.94011 * 11 9 8 14 14 H 1.48502 * 109.46965 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47009 * 120.00278 * 13 11 9 16 16 H 1.48500 * 109.47510 * 240.00460 * 13 11 9 17 17 C 1.53005 * 117.49859 * 254.41433 * 8 7 6 18 18 C 1.52996 * 60.00057 * 252.50861 * 17 8 7 19 19 O 1.34211 * 108.57643 * 0.23751 * 5 4 3 20 20 H 1.09000 * 109.47166 * 90.00294 * 1 2 3 21 21 H 1.08998 * 109.47242 * 210.00634 * 1 2 3 22 22 H 1.09008 * 109.47152 * 330.00297 * 1 2 3 23 23 H 1.08003 * 126.10665 * 359.97438 * 3 2 1 24 24 H 0.96996 * 120.00158 * 180.02562 * 6 5 4 25 25 H 1.09002 * 109.46551 * 66.12177 * 7 6 5 26 26 H 1.08996 * 109.47309 * 306.12343 * 7 6 5 27 27 H 0.96993 * 120.00077 * 185.00983 * 12 11 9 28 28 H 1.08999 * 117.49585 * 359.97438 * 17 8 7 29 29 H 1.08997 * 117.49886 * 145.01939 * 17 8 7 30 30 H 1.08998 * 117.50148 * 252.51316 * 18 17 8 31 31 H 1.09002 * 117.51987 * 107.47852 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3019 1.0798 0.0000 4 7 3.5791 0.6507 -0.0006 5 6 3.5799 -0.6598 -0.0004 6 7 4.7021 -1.4656 -0.0013 7 6 6.0371 -0.8622 -0.0021 8 6 7.0925 -1.9590 -0.1569 9 6 6.7505 -3.0575 -1.1303 10 1 6.2985 -3.9719 -0.7755 11 6 7.0144 -2.8948 -2.4737 12 7 7.4156 -1.7279 -2.9286 13 14 6.8024 -4.3321 -3.6479 14 1 6.3444 -5.5254 -2.8919 15 1 5.7934 -3.9833 -4.6802 16 1 8.1003 -4.6301 -4.3051 17 6 7.9016 -2.3411 1.0843 18 6 8.5616 -1.5468 -0.0446 19 8 2.3080 -1.0881 -0.0049 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5138 23 1 1.9766 2.1096 -0.0004 24 1 4.6062 -2.4308 -0.0014 25 1 6.1974 -0.3337 0.9376 26 1 6.1182 -0.1603 -0.8321 27 1 7.5314 -1.5927 -3.8820 28 1 7.6823 -1.8106 2.0109 29 1 8.1866 -3.3871 1.1970 30 1 9.2808 -2.0702 -0.6746 31 1 8.7763 -0.4940 0.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884494698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:50 Heat of formation + Delta-G solvation = 30.336776 kcal Electronic energy + Delta-G solvation = -14882.439238 eV Core-core repulsion = 12358.694057 eV Total energy + Delta-G solvation = -2523.745181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.94178 -38.95053 -36.13480 -35.26465 -34.02177 -32.53657 -28.32331 -27.31860 -26.23529 -23.01599 -22.90859 -22.06559 -21.13671 -18.92469 -18.03641 -17.69708 -16.70176 -16.23884 -16.15893 -15.30644 -14.99340 -14.53630 -14.35601 -13.99990 -13.70667 -13.49950 -13.03408 -12.97747 -12.88211 -12.37750 -12.26273 -12.00140 -11.49110 -11.17389 -11.00889 -10.75042 -10.48352 -9.97353 -8.45460 -8.12505 -6.25257 0.81678 1.27895 1.38139 1.42640 1.51308 2.01590 2.39882 2.85739 3.17293 3.47040 4.00973 4.18535 4.25776 4.40420 4.53105 4.57528 4.68524 4.73274 4.79682 4.99087 5.02877 5.14571 5.27290 5.34086 5.45111 5.52400 5.64078 5.74971 6.14699 6.37387 6.49002 6.81963 7.27693 7.44398 8.94683 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.008241 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.717937 B = 3396.703009 C = 3986.966043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.109 4.109 3 C -0.026 4.026 4 N -0.581 5.581 5 C 0.446 3.554 6 N -0.659 5.659 7 C 0.210 3.790 8 C -0.002 4.002 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.031 3.969 12 N -0.901 5.901 13 Si 0.945 3.055 14 H -0.263 1.263 15 H -0.289 1.289 16 H -0.282 1.282 17 C -0.180 4.180 18 C -0.155 4.155 19 O -0.245 6.245 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.114 0.886 23 H 0.207 0.793 24 H 0.417 0.583 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 2.092 5.773 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.162 4.162 3 C -0.163 4.163 4 N -0.323 5.323 5 C 0.147 3.853 6 N -0.307 5.307 7 C 0.087 3.913 8 C -0.003 4.003 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.170 4.170 12 N -0.538 5.538 13 Si 0.771 3.229 14 H -0.187 1.187 15 H -0.216 1.216 16 H -0.208 1.208 17 C -0.217 4.217 18 C -0.193 4.193 19 O -0.135 6.135 20 H 0.105 0.895 21 H 0.096 0.904 22 H 0.133 0.867 23 H 0.224 0.776 24 H 0.255 0.745 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.363 2.607 5.617 11.225 hybrid contribution -0.306 -1.348 -1.087 1.758 sum -9.669 1.259 4.529 10.751 Atomic orbital electron populations 1.20301 0.80847 1.05209 1.04224 1.23795 0.95949 0.83012 1.13466 1.23341 0.86820 1.01429 1.04706 1.70848 1.24311 1.06377 1.30744 1.21950 0.80334 0.87136 0.95883 1.43474 0.99749 1.07626 1.79811 1.20541 0.78471 0.94338 0.97931 1.19124 0.89380 0.95857 0.95938 1.20588 1.41605 1.00798 0.91428 0.92038 1.25640 0.94206 0.97342 0.99847 1.70096 1.46337 1.23638 1.13752 0.85710 0.77384 0.80645 0.79118 1.18674 1.21575 1.20834 1.23110 1.06221 0.99928 0.92447 1.22439 0.97251 0.98196 1.01425 1.84337 1.16290 1.38110 1.74719 0.89525 0.90421 0.86707 0.77597 0.74451 0.93613 0.94794 0.93214 0.88948 0.89727 0.91758 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.88 10.43 71.24 0.74 -0.13 16 2 C -0.11 -3.32 7.38 24.74 0.18 -3.14 16 3 C -0.03 -0.86 11.79 83.30 0.98 0.13 16 4 N -0.58 -24.40 10.94 -313.90 -3.43 -27.83 16 5 C 0.45 18.96 9.05 179.08 1.62 20.58 16 6 N -0.66 -28.66 5.42 -461.47 -2.50 -31.16 16 7 C 0.21 9.61 6.05 86.38 0.52 10.13 16 8 C 0.00 -0.10 1.69 -52.93 -0.09 -0.19 16 9 C -0.51 -25.86 7.53 25.60 0.19 -25.66 16 10 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 11 C 0.03 1.66 5.38 84.65 0.46 2.11 16 12 N -0.90 -50.80 12.99 21.45 0.28 -50.53 16 13 Si 0.94 42.48 29.55 68.60 2.03 44.51 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C -0.18 -7.15 9.88 30.59 0.30 -6.85 16 18 C -0.15 -6.94 9.52 30.59 0.29 -6.64 16 19 O -0.25 -9.38 10.80 -9.77 -0.11 -9.49 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.21 4.92 8.06 -2.91 -0.02 4.90 16 24 H 0.42 17.55 7.71 -92.71 -0.72 16.84 16 25 H 0.05 1.96 7.95 -2.39 -0.02 1.94 16 26 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 28 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 29 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -62.53 274.65 1.89 -60.64 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.41 Total: 23.53 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.20 Total: -9.68 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -5.65 Total: -109.51 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.11 Total: -9.49 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -62.53 1.89 -60.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884494698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.977 kcal (2) G-P(sol) polarization free energy of solvation -62.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds