Wall clock time and date at job start Sun Mar 29 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27952 * 126.67598 * 2 1 4 4 N 1.39296 * 113.11497 * 179.69812 * 3 2 1 5 5 C 1.46506 * 124.45646 * 180.29780 * 4 3 2 6 6 C 1.50704 * 109.46923 * 270.18244 * 5 4 3 7 7 H 1.07995 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99890 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99923 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00127 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46946 * 89.99420 * 10 8 6 12 12 H 1.48496 * 109.47227 * 209.99554 * 10 8 6 13 13 H 1.48501 * 109.47044 * 329.99842 * 10 8 6 14 14 C 1.35289 * 111.08541 * 0.46093 * 4 3 2 15 15 O 1.21303 * 127.75530 * 179.86023 * 14 4 3 16 16 C 1.50448 * 126.67503 * 179.97438 * 2 1 3 17 17 C 1.52735 * 116.13872 * 309.29898 * 16 2 1 18 18 C 1.53974 * 86.77101 * 143.17580 * 17 16 2 19 19 C 1.52760 * 116.09692 * 50.86086 * 16 2 1 20 20 H 1.08999 * 109.47127 * 270.03359 * 1 2 3 21 21 H 1.09001 * 109.46918 * 30.03152 * 1 2 3 22 22 H 1.08999 * 109.47263 * 150.02968 * 1 2 3 23 23 H 1.08996 * 109.47013 * 30.18229 * 5 4 3 24 24 H 1.09000 * 109.47131 * 150.18474 * 5 4 3 25 25 H 0.97003 * 119.99783 * 180.02562 * 9 8 6 26 26 H 1.09006 * 113.66960 * 257.64367 * 17 16 2 27 27 H 1.08999 * 113.66820 * 28.70756 * 17 16 2 28 28 H 1.08997 * 113.59098 * 220.74554 * 18 17 16 29 29 H 1.09006 * 113.58079 * 89.93568 * 18 17 16 30 30 H 1.08994 * 113.66070 * 331.25379 * 19 16 2 31 31 H 1.08999 * 113.66113 * 102.22998 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0262 0.0000 4 7 3.6254 0.6996 0.0068 5 6 4.7144 1.6796 0.0145 6 6 5.0925 2.0216 -1.4036 7 1 4.5738 1.5554 -2.2282 8 6 6.1013 2.9291 -1.6484 9 7 6.7332 3.4964 -0.6442 10 14 6.5704 3.3526 -3.4062 11 1 5.7584 4.5058 -3.8711 12 1 8.0114 3.7071 -3.4623 13 1 6.3143 2.1815 -4.2827 14 6 3.8026 -0.6416 0.0016 15 8 4.8506 -1.2523 0.0028 16 6 2.4056 -1.2066 0.0005 17 6 2.1110 -2.2645 1.0621 18 6 2.4910 -3.3117 -0.0008 19 6 2.1124 -2.2633 -1.0630 20 1 -0.3633 0.0006 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3634 -0.8902 -0.5134 23 1 4.3874 2.5819 0.5311 24 1 5.5781 1.2589 0.5294 25 1 7.4427 4.1351 -0.8164 26 1 2.7942 -2.2349 1.9109 27 1 1.0635 -2.3047 1.3609 28 1 1.8421 -4.1875 -0.0019 29 1 3.5503 -3.5691 -0.0002 30 1 1.0654 -2.3030 -1.3633 31 1 2.7960 -2.2313 -1.9114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899346676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:32 Heat of formation + Delta-G solvation = 12.665748 kcal Electronic energy + Delta-G solvation = -15261.251391 eV Core-core repulsion = 12736.739937 eV Total energy + Delta-G solvation = -2524.511454 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.76520 -38.56986 -38.41464 -35.54822 -33.68788 -30.67199 -28.64586 -27.54571 -26.83473 -24.89206 -22.67642 -20.85331 -20.07934 -18.89961 -17.69198 -16.81513 -16.73158 -16.63073 -16.18189 -14.84855 -14.63469 -14.56662 -14.48145 -13.77476 -13.39025 -13.26637 -13.18085 -13.10841 -13.00822 -12.74026 -12.59655 -12.39151 -12.11865 -11.78506 -11.45718 -11.05560 -10.79926 -10.44716 -9.55282 -8.37482 -6.55170 0.63329 1.29350 1.33423 1.43249 1.61965 1.73962 2.29903 2.82009 2.94003 3.16897 3.44293 3.63687 3.82238 4.14106 4.39934 4.65014 4.68066 4.73124 4.82768 4.86584 4.89782 4.95405 4.99785 5.07666 5.21348 5.30970 5.45406 5.52372 5.67416 5.80697 6.48343 6.78825 7.01110 7.16924 8.70622 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.008033 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.157693 B = 3484.717695 C = 3664.118545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.107 3.893 3 N -0.280 5.280 4 N -0.467 5.467 5 C 0.283 3.717 6 C -0.556 4.556 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.923 5.923 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.270 1.270 13 H -0.273 1.273 14 C 0.488 3.512 15 O -0.553 6.553 16 C -0.161 4.161 17 C -0.083 4.083 18 C -0.129 4.129 19 C -0.089 4.089 20 H 0.112 0.888 21 H 0.084 0.916 22 H 0.122 0.878 23 H 0.027 0.973 24 H 0.013 0.987 25 H 0.274 0.726 26 H 0.053 0.947 27 H 0.148 0.852 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.146 0.854 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -11.480 0.811 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 N -0.086 5.086 4 N -0.284 5.284 5 C 0.164 3.836 6 C -0.594 4.594 7 H 0.065 0.935 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.801 3.199 11 H -0.186 1.186 12 H -0.194 1.194 13 H -0.198 1.198 14 C 0.277 3.723 15 O -0.430 6.430 16 C -0.167 4.167 17 C -0.121 4.121 18 C -0.166 4.166 19 C -0.128 4.128 20 H 0.131 0.869 21 H 0.103 0.897 22 H 0.140 0.860 23 H 0.045 0.955 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.724 -10.529 0.878 18.944 hybrid contribution 1.506 0.136 -0.604 1.628 sum -14.217 -10.393 0.274 17.613 Atomic orbital electron populations 1.20625 0.80273 1.05990 1.05879 1.26163 0.99102 0.88698 0.94563 1.74772 0.88958 1.29026 1.15820 1.50296 1.03786 1.06817 1.67530 1.18806 0.81553 0.86068 0.97199 1.21529 1.19788 1.26079 0.92050 0.93526 1.25935 0.94999 0.94877 1.02999 1.70035 1.24040 1.28915 1.33206 0.85262 0.78096 0.78737 0.77794 1.18613 1.19436 1.19779 1.21507 0.91905 0.83186 0.75734 1.90619 1.33900 1.66362 1.52112 1.22049 0.90909 0.96888 1.06852 1.22663 1.04722 0.90424 0.94303 1.22889 1.01729 0.97906 0.94058 1.22700 1.04521 0.91096 0.94456 0.86942 0.89738 0.85953 0.95483 0.96897 0.91749 0.92805 0.83430 0.86275 0.92552 0.83566 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.39 71.24 0.74 -0.26 16 2 C 0.11 3.16 6.88 46.46 0.32 3.48 16 3 N -0.28 -12.01 12.05 -41.42 -0.50 -12.51 16 4 N -0.47 -24.33 3.54 -466.06 -1.65 -25.98 16 5 C 0.28 17.21 6.00 85.63 0.51 17.72 16 6 C -0.56 -35.00 9.39 25.60 0.24 -34.76 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.72 5.46 84.65 0.46 1.18 16 9 N -0.92 -57.59 13.29 21.45 0.28 -57.31 16 10 Si 0.98 46.65 29.54 68.60 2.03 48.68 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 14 C 0.49 23.48 7.52 87.57 0.66 24.14 16 15 O -0.55 -30.46 17.48 -3.10 -0.05 -30.52 16 16 C -0.16 -5.06 1.12 -53.93 -0.06 -5.12 16 17 C -0.08 -1.81 7.37 30.84 0.23 -1.58 16 18 C -0.13 -2.70 7.86 31.25 0.25 -2.45 16 19 C -0.09 -2.09 7.37 30.84 0.23 -1.86 16 20 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.12 0.80 7.32 -2.39 -0.02 0.78 16 23 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.01 0.86 8.05 -2.39 -0.02 0.84 16 25 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 26 H 0.05 1.42 8.12 -2.38 -0.02 1.40 16 27 H 0.15 1.72 8.06 -2.39 -0.02 1.70 16 28 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.58 7.90 -2.38 -0.02 1.56 16 30 H 0.15 1.92 7.32 -2.39 -0.02 1.90 16 31 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 Total: -1.00 -83.80 270.16 4.80 -79.00 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: 1.12 Total: -1.85 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 3.58 Total: 0.49 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -1.86 Total: -95.80 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -83.80 4.80 -79.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899346676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.661 kcal (2) G-P(sol) polarization free energy of solvation -83.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds