Wall clock time and date at job start Sun Mar 29 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46755 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00621 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00085 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00487 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99548 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47262 * 89.99890 * 13 11 9 15 15 H 1.48501 * 109.46975 * 209.99643 * 13 11 9 16 16 H 1.48500 * 109.47255 * 329.99580 * 13 11 9 17 17 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 18 18 C 1.50703 * 125.80106 * 180.02562 * 17 4 3 19 19 N 1.34658 * 108.39785 * 0.26724 * 17 4 3 20 20 H 0.96996 * 124.85358 * 179.74542 * 19 17 4 21 21 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 22 22 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 23 23 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 24 24 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 25 25 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 26 26 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 27 27 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 28 28 H 0.97000 * 120.00062 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47152 * 89.99942 * 18 17 4 30 30 H 1.09001 * 109.46980 * 330.00042 * 18 17 4 31 31 H 1.09004 * 109.47113 * 210.00023 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6515 5.0504 0.0012 10 1 4.6115 5.3418 0.0009 11 6 6.6375 6.0143 0.0021 12 7 6.3116 7.2883 0.0021 13 14 8.4362 5.5102 0.0018 14 1 8.9131 5.3778 -1.3984 15 1 9.2400 6.5437 0.7027 16 1 8.5857 4.2086 0.7009 17 6 3.5998 -0.7550 0.0015 18 6 4.7722 -1.7019 0.0030 19 7 2.3008 -1.1098 -0.0045 20 1 1.9758 -2.0237 -0.0087 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3634 0.8903 0.5134 24 1 1.9628 2.1234 -0.0007 25 1 3.9374 3.2030 0.0002 26 1 6.6127 3.3658 0.8908 27 1 6.6131 3.3658 -0.8892 28 1 7.0053 7.9664 0.0023 29 1 5.0542 -1.9294 1.0310 30 1 5.6144 -1.2381 -0.5106 31 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914751109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:05 Heat of formation + Delta-G solvation = -9.496694 kcal Electronic energy + Delta-G solvation = -14543.674541 eV Core-core repulsion = 12018.202051 eV Total energy + Delta-G solvation = -2525.472490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15126 -38.24868 -34.17369 -32.57177 -32.24190 -30.90543 -29.15262 -27.77120 -24.73309 -22.70801 -20.97510 -20.17079 -19.12408 -17.01430 -16.48258 -15.40377 -15.06987 -14.84241 -13.99217 -13.96940 -13.68858 -13.23560 -13.16543 -12.78801 -12.46397 -12.23657 -12.21485 -12.08034 -11.94992 -11.34454 -10.90593 -10.69200 -9.89057 -9.39981 -9.06664 -8.69945 -8.66179 -8.04243 -7.76780 -6.13688 -4.14839 2.06442 2.52818 3.18378 3.32954 3.39287 3.48747 4.17903 4.35409 4.41681 4.83561 4.98564 5.11116 5.21959 5.31331 5.41129 5.54654 5.70523 5.73919 5.82570 6.00451 6.14032 6.43002 6.90258 6.96805 7.12193 7.19753 7.40818 7.53008 7.54861 8.28167 8.70451 8.86136 9.17294 9.47835 10.98465 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041189 B = 0.006405 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.637705 B = 4370.212437 C = 5024.099848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.001 3.999 3 C -0.162 4.162 4 C -0.220 4.220 5 C 0.575 3.425 6 O -0.570 6.570 7 N -0.700 5.700 8 C 0.221 3.779 9 C -0.540 4.540 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C 0.093 3.907 18 C -0.091 4.091 19 N -0.554 5.554 20 H 0.410 0.590 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.146 0.854 25 H 0.396 0.604 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 -16.747 -0.003 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.186 4.186 4 C -0.230 4.230 5 C 0.362 3.638 6 O -0.452 6.452 7 N -0.348 5.348 8 C 0.099 3.901 9 C -0.578 4.578 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.532 5.532 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.184 1.184 17 C -0.023 4.023 18 C -0.148 4.148 19 N -0.150 5.150 20 H 0.246 0.754 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.163 0.837 25 H 0.230 0.770 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.644 -16.981 -0.002 19.528 hybrid contribution 0.271 -0.192 -0.011 0.333 sum -9.372 -17.173 -0.014 19.564 Atomic orbital electron populations 1.20291 0.87967 1.03118 1.02504 1.20147 0.93279 0.86075 1.11217 1.21893 0.91066 0.97848 1.07825 1.20394 0.93405 0.92282 1.16899 1.17399 0.87335 0.82405 0.76620 1.90662 1.28722 1.72762 1.53036 1.45959 1.11276 1.05033 1.72499 1.19464 0.83539 0.90429 0.96677 1.21129 0.95762 0.88088 1.52843 0.90282 1.24795 0.99265 0.94651 0.93961 1.69885 1.33774 0.99742 1.49847 0.86814 0.84776 0.79079 0.79005 1.19889 1.21001 1.18443 1.20263 0.84637 0.94393 1.03034 1.20535 0.94962 0.96107 1.03231 1.41455 1.05358 1.08433 1.59802 0.75409 0.91203 0.92080 0.90010 0.83665 0.77045 0.95763 0.96219 0.92367 0.90734 0.87874 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 36.01 0.37 -0.27 16 2 C 0.00 0.02 7.13 -81.87 -0.58 -0.57 16 3 C -0.16 -2.39 10.45 -37.50 -0.39 -2.78 16 4 C -0.22 -3.86 6.29 -103.35 -0.65 -4.51 16 5 C 0.57 12.41 7.81 -12.59 -0.10 12.31 16 6 O -0.57 -13.68 14.81 5.25 0.08 -13.61 16 7 N -0.70 -15.69 5.54 -62.61 -0.35 -16.04 16 8 C 0.22 5.74 4.50 -5.19 -0.02 5.72 16 9 C -0.54 -15.38 9.83 -34.44 -0.34 -15.72 16 10 H 0.08 2.34 7.84 -52.48 -0.41 1.92 16 11 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 12 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 13 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 17 C 0.09 1.36 7.17 -81.88 -0.59 0.77 16 18 C -0.09 -1.15 9.88 36.01 0.36 -0.80 16 19 N -0.55 -6.19 5.90 -5.42 -0.03 -6.22 16 20 H 0.41 3.05 8.96 -40.82 -0.37 2.69 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.15 1.96 7.70 -52.49 -0.40 1.56 16 25 H 0.40 8.02 7.44 -40.82 -0.30 7.71 16 26 H 0.02 0.66 7.20 -51.92 -0.37 0.29 16 27 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.59 6.46 -51.93 -0.34 1.25 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -33.99 269.58 -6.04 -40.03 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.87 Total: 4.53 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.04 Total: -3.72 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.39 Total: -48.63 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.99 -6.04 -40.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914751109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.534 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds