Wall clock time and date at job start Sun Mar 29 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46755 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00621 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00085 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00487 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99548 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47262 * 89.99890 * 13 11 9 15 15 H 1.48501 * 109.46975 * 209.99643 * 13 11 9 16 16 H 1.48500 * 109.47255 * 329.99580 * 13 11 9 17 17 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 18 18 C 1.50703 * 125.80106 * 180.02562 * 17 4 3 19 19 N 1.34658 * 108.39785 * 0.26724 * 17 4 3 20 20 H 0.96996 * 124.85358 * 179.74542 * 19 17 4 21 21 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 22 22 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 23 23 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 24 24 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 25 25 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 26 26 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 27 27 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 28 28 H 0.97000 * 120.00062 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47152 * 89.99942 * 18 17 4 30 30 H 1.09001 * 109.46980 * 330.00042 * 18 17 4 31 31 H 1.09004 * 109.47113 * 210.00023 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6515 5.0504 0.0012 10 1 4.6115 5.3418 0.0009 11 6 6.6375 6.0143 0.0021 12 7 6.3116 7.2883 0.0021 13 14 8.4362 5.5102 0.0018 14 1 8.9131 5.3778 -1.3984 15 1 9.2400 6.5437 0.7027 16 1 8.5857 4.2086 0.7009 17 6 3.5998 -0.7550 0.0015 18 6 4.7722 -1.7019 0.0030 19 7 2.3008 -1.1098 -0.0045 20 1 1.9758 -2.0237 -0.0087 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3634 0.8903 0.5134 24 1 1.9628 2.1234 -0.0007 25 1 3.9374 3.2030 0.0002 26 1 6.6127 3.3658 0.8908 27 1 6.6131 3.3658 -0.8892 28 1 7.0053 7.9664 0.0023 29 1 5.0542 -1.9294 1.0310 30 1 5.6144 -1.2381 -0.5106 31 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914751109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:05 Heat of formation + Delta-G solvation = -34.732085 kcal Electronic energy + Delta-G solvation = -14544.768830 eV Core-core repulsion = 12018.202051 eV Total energy + Delta-G solvation = -2526.566778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24585 -39.94786 -36.12192 -34.41020 -33.47801 -32.17345 -30.11901 -29.64062 -25.96012 -24.40864 -22.61123 -21.23632 -20.78677 -18.83889 -17.82054 -17.12176 -16.53244 -16.33547 -15.88194 -15.52383 -14.81062 -14.61960 -14.18816 -14.14111 -14.04470 -13.88848 -13.45882 -13.05673 -12.97322 -12.88322 -12.68644 -12.35802 -11.91180 -11.65389 -10.90877 -10.78095 -10.01488 -9.66076 -8.92689 -8.39261 -6.46330 0.78488 1.33920 1.35004 1.45807 1.49302 2.18901 2.29680 2.62349 2.74194 2.96180 3.89315 4.03274 4.24392 4.28001 4.53602 4.67019 4.73649 4.81234 4.86074 4.93898 5.04201 5.10835 5.18556 5.27370 5.37068 5.60134 5.82249 6.00420 6.13632 6.53801 6.68179 6.94498 7.17121 7.49472 8.75731 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041189 B = 0.006405 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.637705 B = 4370.212437 C = 5024.099848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.192 4.192 4 C -0.267 4.267 5 C 0.571 3.429 6 O -0.602 6.602 7 N -0.705 5.705 8 C 0.234 3.766 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.027 3.973 12 N -0.931 5.931 13 Si 0.940 3.060 14 H -0.264 1.264 15 H -0.270 1.270 16 H -0.261 1.261 17 C 0.103 3.897 18 C -0.089 4.089 19 N -0.533 5.533 20 H 0.432 0.568 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.147 0.853 25 H 0.404 0.596 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.273 0.727 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -19.001 -0.024 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.215 4.215 4 C -0.277 4.277 5 C 0.362 3.638 6 O -0.486 6.486 7 N -0.353 5.353 8 C 0.111 3.889 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.173 4.173 12 N -0.570 5.570 13 Si 0.763 3.237 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.186 1.186 17 C -0.016 4.016 18 C -0.147 4.147 19 N -0.131 5.131 20 H 0.273 0.727 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.164 0.836 25 H 0.239 0.761 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.814 -19.262 -0.025 22.090 hybrid contribution 0.484 0.449 -0.006 0.660 sum -10.330 -18.813 -0.030 21.462 Atomic orbital electron populations 1.20445 0.84619 1.04718 1.03928 1.20689 0.95033 0.85113 1.07771 1.22021 0.90298 0.99162 1.10062 1.20221 0.92862 0.93498 1.21115 1.18005 0.88522 0.82000 0.75278 1.90626 1.30374 1.73128 1.54484 1.45833 1.10499 1.05542 1.73396 1.19084 0.84794 0.89495 0.95550 1.21288 0.94948 0.89572 1.52784 0.92568 1.25614 1.03749 0.94553 0.93430 1.69983 1.35509 1.00833 1.50696 0.85820 0.79478 0.78825 0.79549 1.18835 1.19507 1.18567 1.20427 0.86389 0.93591 1.01233 1.20535 0.93302 0.97028 1.03803 1.41431 1.04053 1.09672 1.57947 0.72708 0.89731 0.89525 0.89425 0.83555 0.76100 0.97014 0.97107 0.91784 0.90002 0.90956 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.41 71.24 0.74 -0.19 16 2 C 0.02 0.49 7.13 40.98 0.29 0.78 16 3 C -0.19 -5.49 10.45 23.62 0.25 -5.25 16 4 C -0.27 -9.35 6.29 -19.04 -0.12 -9.47 16 5 C 0.57 25.33 7.81 86.62 0.68 26.01 16 6 O -0.60 -29.73 14.81 -4.13 -0.06 -29.79 16 7 N -0.70 -32.65 5.54 -470.25 -2.61 -35.25 16 8 C 0.23 12.49 4.50 85.63 0.38 12.88 16 9 C -0.55 -32.07 9.83 25.60 0.25 -31.82 16 10 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 11 C 0.03 1.57 5.47 84.66 0.46 2.03 16 12 N -0.93 -57.23 13.96 21.45 0.30 -56.93 16 13 Si 0.94 45.67 27.47 68.60 1.88 47.55 16 14 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 17 C 0.10 2.81 7.17 41.78 0.30 3.11 16 18 C -0.09 -2.11 9.88 71.24 0.70 -1.41 16 19 N -0.53 -10.11 5.90 -171.07 -1.01 -11.12 16 20 H 0.43 4.45 8.96 -92.71 -0.83 3.61 16 21 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.15 3.97 7.70 -2.91 -0.02 3.95 16 25 H 0.40 17.08 7.44 -92.71 -0.69 16.39 16 26 H 0.01 0.66 7.20 -2.38 -0.02 0.64 16 27 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.22 6.46 -2.39 -0.02 2.20 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -75.04 269.58 2.03 -73.02 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -0.42 Total: 15.87 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 3.94 Total: -3.33 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -3.32 Total: -103.31 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.06 Total: -29.79 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -75.04 2.03 -73.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914751109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.284 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds