Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47657 * 2 1 4 4 N 1.46904 * 109.47305 * 179.88850 * 3 2 1 5 5 C 1.46894 * 111.00026 * 298.25585 * 4 3 2 6 6 C 1.50708 * 109.47138 * 293.21615 * 5 4 3 7 7 H 1.07997 * 119.99892 * 354.97505 * 6 5 4 8 8 C 1.37871 * 119.99703 * 174.96970 * 6 5 4 9 9 N 1.31508 * 120.00659 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99776 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47094 * 60.00229 * 10 8 6 12 12 H 1.48497 * 109.47223 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47162 * 300.00424 * 10 8 6 14 14 C 1.46900 * 110.99717 * 62.20782 * 4 3 2 15 15 C 1.50698 * 109.47207 * 66.04412 * 14 4 3 16 16 C 1.40895 * 126.29467 * 270.30002 * 15 14 4 17 17 C 1.34849 * 107.42019 * 180.12799 * 16 15 14 18 18 N 1.36343 * 108.21707 * 359.61816 * 17 16 15 19 19 H 0.96997 * 125.64088 * 180.26239 * 18 17 16 20 20 C 1.34855 * 126.29121 * 89.99831 * 15 14 4 21 21 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47040 * 300.00673 * 1 2 3 23 23 H 1.09003 * 109.46972 * 59.99789 * 1 2 3 24 24 H 1.09003 * 109.47040 * 239.99326 * 2 1 3 25 25 H 1.09003 * 109.46972 * 120.00211 * 2 1 3 26 26 H 1.09005 * 109.47003 * 59.89398 * 3 2 1 27 27 H 1.08994 * 109.47299 * 299.89421 * 3 2 1 28 28 H 1.08995 * 109.47289 * 53.21840 * 5 4 3 29 29 H 1.08999 * 109.47199 * 173.22199 * 5 4 3 30 30 H 0.97006 * 120.00765 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46981 * 306.04736 * 14 4 3 32 32 H 1.08997 * 109.47018 * 186.04533 * 14 4 3 33 33 H 1.07996 * 126.28889 * 359.97438 * 16 15 14 34 34 H 1.08001 * 125.89487 * 179.88612 * 17 16 15 35 35 H 1.08001 * 125.89046 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 0.0027 5 6 4.0333 0.7938 1.2120 6 6 3.6883 1.6278 2.4190 7 1 3.2069 2.5864 2.2933 8 6 3.9871 1.1669 3.6836 9 7 4.5736 -0.0001 3.8367 10 14 3.5587 2.2003 5.1796 11 1 2.0922 2.4304 5.2189 12 1 3.9815 1.4869 6.4115 13 1 4.2625 3.5054 5.0977 14 6 4.0377 0.8020 -1.2092 15 6 3.6814 1.6348 -2.4135 16 6 2.5127 1.5183 -3.1919 17 6 2.5855 2.4434 -4.1704 18 7 3.7523 3.1324 -4.0196 19 1 4.0571 3.8586 -4.5858 20 6 4.4198 2.6323 -2.9410 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6752 1.9568 0.8891 27 1 1.6784 1.9557 -0.8909 28 1 3.5888 -0.1960 1.3153 29 1 5.1163 0.6994 1.1333 30 1 4.7842 -0.3242 4.7264 31 1 3.6034 -0.1923 -1.3137 32 1 5.1218 0.7188 -1.1328 33 1 1.7079 0.8155 -3.0353 34 1 1.8451 2.6125 -4.9383 35 1 5.3749 2.9763 -2.5722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140707416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = 43.532534 kcal Electronic energy + Delta-G solvation = -15319.744044 eV Core-core repulsion = 12932.404168 eV Total energy + Delta-G solvation = -2387.339875 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71406 -37.15552 -32.70940 -32.22105 -30.68924 -28.83889 -26.87627 -25.67944 -23.54454 -21.93005 -20.48105 -19.66902 -18.65681 -17.48225 -16.04824 -15.00405 -14.66575 -14.22586 -13.81624 -13.34897 -13.19338 -13.12525 -12.89417 -12.33226 -12.13392 -11.69368 -11.32951 -11.00629 -10.84870 -10.75807 -10.64681 -10.51303 -10.32505 -9.81593 -9.51772 -9.11716 -8.38066 -8.30113 -7.75550 -6.91650 -5.93081 -3.93407 2.61077 3.35087 3.38884 3.42459 3.46293 3.63798 4.51360 5.31874 5.41491 5.43796 5.55847 5.65651 5.69999 5.76863 5.93460 6.02877 6.18596 6.32180 6.35491 6.51257 6.53322 6.59163 6.68632 6.78660 6.92957 7.14917 7.33922 7.46093 7.51586 7.58867 7.88559 7.93727 8.25666 8.40945 8.73142 9.15388 9.70223 11.17398 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.007336 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.803881 B = 3815.622307 C = 4219.078600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.163 4.163 3 C 0.070 3.930 4 N -0.531 5.531 5 C 0.187 3.813 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.118 3.882 15 C -0.141 4.141 16 C -0.190 4.190 17 C -0.031 4.031 18 N -0.567 5.567 19 H 0.409 0.591 20 C -0.006 4.006 21 H 0.043 0.957 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.002 0.998 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 3.174 -13.927 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C -0.059 4.059 4 N -0.253 5.253 5 C 0.062 3.938 6 C -0.539 4.539 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.011 4.011 15 C -0.147 4.147 16 C -0.215 4.215 17 C -0.161 4.161 18 N -0.162 5.162 19 H 0.244 0.756 20 C -0.137 4.137 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.553 3.653 -13.850 14.757 hybrid contribution -0.370 -0.052 0.673 0.770 sum -3.923 3.601 -13.177 14.212 Atomic orbital electron populations 1.21644 0.96762 1.00432 1.01093 1.22162 0.95290 1.00790 1.01948 1.21989 0.88550 0.94122 1.01199 1.62335 1.06488 1.54648 1.01872 1.19779 0.94907 0.93315 0.85774 1.21141 1.38438 1.04252 0.90103 0.92088 1.24964 0.95593 0.95115 0.98950 1.69948 1.42549 1.18875 1.22719 0.86617 0.78748 0.80337 0.82026 1.20356 1.21465 1.20289 1.20394 0.99087 0.93690 0.87898 1.19533 0.95984 1.00378 0.98845 1.20831 0.99876 1.02755 0.98070 1.21679 0.91428 0.99139 1.03843 1.41906 1.17981 1.30460 1.25867 0.75607 1.21662 1.00297 0.99782 0.91944 0.93819 0.92900 0.93571 0.92987 0.90890 0.90877 0.92426 0.98039 0.95954 0.93035 0.95028 0.91572 0.85368 0.82707 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.16 -3.09 5.28 -26.74 -0.14 -3.23 16 3 C 0.07 1.44 4.93 -3.83 -0.02 1.42 16 4 N -0.53 -11.88 4.69 -237.52 -1.11 -12.99 16 5 C 0.19 4.96 4.52 -4.98 -0.02 4.93 16 6 C -0.50 -14.31 8.40 -34.44 -0.29 -14.60 16 7 H 0.06 1.75 7.36 -52.49 -0.39 1.36 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.12 2.28 5.26 -4.98 -0.03 2.25 16 15 C -0.14 -2.37 4.98 -104.82 -0.52 -2.90 16 16 C -0.19 -2.88 9.42 -39.78 -0.37 -3.26 16 17 C -0.03 -0.38 11.94 -16.75 -0.20 -0.58 16 18 N -0.57 -6.70 6.07 -12.85 -0.08 -6.78 16 19 H 0.41 3.33 8.96 -40.82 -0.37 2.96 16 20 C -0.01 -0.09 11.85 -16.75 -0.20 -0.29 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.94 6.33 -51.93 -0.33 0.61 16 25 H 0.07 1.61 6.29 -51.93 -0.33 1.28 16 26 H 0.07 1.65 6.97 -51.93 -0.36 1.29 16 27 H 0.06 1.11 6.19 -51.93 -0.32 0.79 16 28 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 29 H 0.02 0.63 7.92 -51.93 -0.41 0.22 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.03 0.61 6.07 -51.93 -0.32 0.30 16 32 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 33 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -31.34 283.78 -7.93 -39.27 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.21 Total: 2.21 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.52 Total: -16.64 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.46 Total: -46.14 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.34 -7.93 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140707416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.804 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds