Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47657 * 2 1 4 4 N 1.46904 * 109.47305 * 179.88850 * 3 2 1 5 5 C 1.46894 * 111.00026 * 298.25585 * 4 3 2 6 6 C 1.50708 * 109.47138 * 293.21615 * 5 4 3 7 7 H 1.07997 * 119.99892 * 354.97505 * 6 5 4 8 8 C 1.37871 * 119.99703 * 174.96970 * 6 5 4 9 9 N 1.31508 * 120.00659 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99776 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47094 * 60.00229 * 10 8 6 12 12 H 1.48497 * 109.47223 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47162 * 300.00424 * 10 8 6 14 14 C 1.46900 * 110.99717 * 62.20782 * 4 3 2 15 15 C 1.50698 * 109.47207 * 66.04412 * 14 4 3 16 16 C 1.40895 * 126.29467 * 270.30002 * 15 14 4 17 17 C 1.34849 * 107.42019 * 180.12799 * 16 15 14 18 18 N 1.36343 * 108.21707 * 359.61816 * 17 16 15 19 19 H 0.96997 * 125.64088 * 180.26239 * 18 17 16 20 20 C 1.34855 * 126.29121 * 89.99831 * 15 14 4 21 21 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47040 * 300.00673 * 1 2 3 23 23 H 1.09003 * 109.46972 * 59.99789 * 1 2 3 24 24 H 1.09003 * 109.47040 * 239.99326 * 2 1 3 25 25 H 1.09003 * 109.46972 * 120.00211 * 2 1 3 26 26 H 1.09005 * 109.47003 * 59.89398 * 3 2 1 27 27 H 1.08994 * 109.47299 * 299.89421 * 3 2 1 28 28 H 1.08995 * 109.47289 * 53.21840 * 5 4 3 29 29 H 1.08999 * 109.47199 * 173.22199 * 5 4 3 30 30 H 0.97006 * 120.00765 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46981 * 306.04736 * 14 4 3 32 32 H 1.08997 * 109.47018 * 186.04533 * 14 4 3 33 33 H 1.07996 * 126.28889 * 359.97438 * 16 15 14 34 34 H 1.08001 * 125.89487 * 179.88612 * 17 16 15 35 35 H 1.08001 * 125.89046 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 0.0027 5 6 4.0333 0.7938 1.2120 6 6 3.6883 1.6278 2.4190 7 1 3.2069 2.5864 2.2933 8 6 3.9871 1.1669 3.6836 9 7 4.5736 -0.0001 3.8367 10 14 3.5587 2.2003 5.1796 11 1 2.0922 2.4304 5.2189 12 1 3.9815 1.4869 6.4115 13 1 4.2625 3.5054 5.0977 14 6 4.0377 0.8020 -1.2092 15 6 3.6814 1.6348 -2.4135 16 6 2.5127 1.5183 -3.1919 17 6 2.5855 2.4434 -4.1704 18 7 3.7523 3.1324 -4.0196 19 1 4.0571 3.8586 -4.5858 20 6 4.4198 2.6323 -2.9410 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6752 1.9568 0.8891 27 1 1.6784 1.9557 -0.8909 28 1 3.5888 -0.1960 1.3153 29 1 5.1163 0.6994 1.1333 30 1 4.7842 -0.3242 4.7264 31 1 3.6034 -0.1923 -1.3137 32 1 5.1218 0.7188 -1.1328 33 1 1.7079 0.8155 -3.0353 34 1 1.8451 2.6125 -4.9383 35 1 5.3749 2.9763 -2.5722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140707416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = 22.825503 kcal Electronic energy + Delta-G solvation = -15320.641968 eV Core-core repulsion = 12932.404168 eV Total energy + Delta-G solvation = -2388.237799 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81713 -38.87209 -34.83855 -33.70048 -32.12193 -30.05292 -28.79280 -27.16695 -25.39009 -23.64451 -21.62666 -21.22680 -19.88915 -18.69471 -18.21987 -16.84874 -16.39870 -16.00025 -15.25454 -14.83992 -14.52355 -14.35193 -14.17476 -14.04877 -13.54103 -13.21388 -13.09169 -12.75742 -12.60514 -12.45062 -12.25042 -12.18427 -12.10768 -11.69752 -11.27675 -11.18364 -10.55925 -9.48575 -8.89684 -8.72466 -8.14793 -6.24810 1.40879 1.44308 1.51859 1.54630 2.13713 2.43773 2.69666 3.16367 3.68567 4.14663 4.22241 4.35944 4.43580 4.57018 4.59939 4.64632 4.77533 4.85485 4.93328 5.00781 5.12305 5.17485 5.22607 5.32582 5.39998 5.49566 5.56695 5.63408 5.73035 6.13935 6.17194 6.35412 6.50245 6.78718 6.93040 6.99142 7.44455 8.94978 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.007336 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.803881 B = 3815.622307 C = 4219.078600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C 0.077 3.923 4 N -0.538 5.538 5 C 0.204 3.796 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.123 3.877 15 C -0.173 4.173 16 C -0.219 4.219 17 C -0.008 4.008 18 N -0.550 5.550 19 H 0.429 0.571 20 C -0.010 4.010 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.078 0.922 28 H -0.023 1.023 29 H -0.006 1.006 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.196 0.804 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 4.735 -15.356 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C -0.051 4.051 4 N -0.261 5.261 5 C 0.077 3.923 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.790 3.210 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.005 4.005 15 C -0.180 4.180 16 C -0.244 4.244 17 C -0.139 4.139 18 N -0.146 5.146 19 H 0.268 0.732 20 C -0.142 4.142 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.096 0.904 28 H -0.005 1.005 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.213 0.787 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.877 5.239 -15.318 16.908 hybrid contribution 0.067 -0.540 1.010 1.147 sum -4.810 4.699 -14.308 15.810 Atomic orbital electron populations 1.21594 0.93867 1.01793 1.01986 1.22022 0.97794 0.99182 1.00272 1.21920 0.87337 0.95044 1.00795 1.62266 1.07819 1.54472 1.01509 1.19418 0.93011 0.92286 0.87543 1.21407 1.38595 1.04318 0.91269 0.92462 1.25862 0.95212 0.96301 1.02164 1.70080 1.43380 1.20533 1.23606 0.85504 0.78889 0.78693 0.77943 1.19358 1.20759 1.19420 1.20308 0.98273 0.94022 0.87888 1.19385 0.98037 1.01761 0.98805 1.20940 0.99689 1.04443 0.99300 1.22213 0.91478 0.97107 1.03113 1.41903 1.17374 1.30398 1.24951 0.73170 1.21759 1.00577 0.99299 0.92585 0.92279 0.93437 0.91182 0.92250 0.94894 0.93312 0.90416 1.00490 0.98770 0.92809 0.95609 0.92591 0.85326 0.78736 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.91 71.98 0.71 -3.37 16 2 C -0.15 -5.92 5.28 30.59 0.16 -5.76 16 3 C 0.08 3.22 4.93 86.30 0.43 3.64 16 4 N -0.54 -24.90 4.69 -905.39 -4.24 -29.14 16 5 C 0.20 11.35 4.52 85.56 0.39 11.74 16 6 C -0.52 -30.50 8.40 25.60 0.21 -30.29 16 7 H 0.06 3.35 7.36 -2.91 -0.02 3.33 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.94 -57.80 13.29 21.44 0.28 -57.51 16 10 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.12 4.92 5.26 85.56 0.45 5.37 16 15 C -0.17 -5.72 4.98 -19.99 -0.10 -5.82 16 16 C -0.22 -6.18 9.42 22.14 0.21 -5.98 16 17 C -0.01 -0.17 11.94 83.21 0.99 0.83 16 18 N -0.55 -11.14 6.07 -194.55 -1.18 -12.33 16 19 H 0.43 5.29 8.96 -92.71 -0.83 4.46 16 20 C -0.01 -0.27 11.85 83.21 0.99 0.71 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.18 6.33 -2.39 -0.02 2.16 16 25 H 0.03 1.52 6.29 -2.39 -0.02 1.50 16 26 H 0.05 2.24 6.97 -2.38 -0.02 2.23 16 27 H 0.08 2.93 6.19 -2.39 -0.01 2.91 16 28 H -0.02 -1.35 6.02 -2.39 -0.01 -1.36 16 29 H -0.01 -0.35 7.92 -2.39 -0.02 -0.37 16 30 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 31 H 0.03 1.04 6.07 -2.39 -0.01 1.03 16 32 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 33 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -69.30 283.78 2.03 -67.27 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.24 Total: 12.43 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.90 Total: -28.34 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -5.14 Total: -98.98 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.30 2.03 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140707416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.093 kcal (2) G-P(sol) polarization free energy of solvation -69.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds