Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34856 * 126.29543 * 2 1 4 4 N 1.36336 * 108.22296 * 180.02562 * 3 2 1 5 5 H 0.96993 * 125.64134 * 179.97438 * 4 3 2 6 6 C 1.36351 * 108.72557 * 359.97438 * 4 3 2 7 7 C 1.50696 * 125.88833 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.46962 * 105.06326 * 7 6 4 9 9 C 1.46896 * 111.00159 * 287.93853 * 8 7 6 10 10 C 1.46901 * 110.99984 * 163.98471 * 8 7 6 11 11 C 1.50699 * 109.47384 * 190.00289 * 10 8 7 12 12 H 1.08004 * 119.99695 * 359.97438 * 11 10 8 13 13 C 1.37870 * 120.00436 * 179.97438 * 11 10 8 14 14 N 1.31518 * 120.00538 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99886 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47160 * 90.00210 * 15 13 11 17 17 H 1.48504 * 109.47344 * 210.00064 * 15 13 11 18 18 H 1.48497 * 109.46988 * 329.99836 * 15 13 11 19 19 C 1.34846 * 108.21641 * 359.72750 * 6 4 3 20 20 C 1.50709 * 126.29031 * 180.29814 * 19 6 4 21 21 H 1.09002 * 109.47017 * 90.01929 * 1 2 3 22 22 H 1.09003 * 109.46650 * 330.02594 * 1 2 3 23 23 H 1.08993 * 109.46999 * 210.02398 * 1 2 3 24 24 H 1.08005 * 125.88386 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.47357 * 225.06504 * 7 6 4 26 26 H 1.09006 * 109.47456 * 345.06549 * 7 6 4 27 27 H 1.09000 * 109.47029 * 56.64466 * 9 8 7 28 28 H 1.09002 * 109.47376 * 176.64312 * 9 8 7 29 29 H 1.08997 * 109.47272 * 296.64176 * 9 8 7 30 30 H 1.09005 * 109.46929 * 309.99693 * 10 8 7 31 31 H 1.09000 * 109.47145 * 69.99803 * 10 8 7 32 32 H 0.96997 * 120.00144 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.46736 * 265.18844 * 20 19 6 34 34 H 1.09001 * 109.46776 * 25.18848 * 20 19 6 35 35 H 1.08992 * 109.46947 * 145.19330 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6640 -0.0006 5 1 4.3832 1.2380 -0.0011 6 6 3.6169 -0.6995 -0.0004 7 6 4.8478 -1.5689 -0.0014 8 7 5.0413 -2.1451 1.3359 9 6 5.4916 -1.1227 2.2897 10 6 5.9804 -3.2739 1.2919 11 6 5.9676 -3.9901 2.6178 12 1 5.3263 -3.6412 3.4138 13 6 6.7745 -5.0905 2.8148 14 7 6.7638 -5.7152 3.9721 15 14 7.8832 -5.6943 1.4379 16 1 9.2027 -5.0198 1.5331 17 1 8.0680 -7.1628 1.5590 18 1 7.2601 -5.3803 0.1271 19 6 2.3409 -1.1356 0.0064 20 6 1.8897 -2.5735 0.0154 21 1 -0.3633 -0.0003 -1.0277 22 1 -0.3633 0.8903 0.5135 23 1 -0.3633 -0.8897 0.5142 24 1 1.9747 2.1151 -0.0004 25 1 4.7251 -2.3715 -0.7286 26 1 5.7172 -0.9675 -0.2672 27 1 4.7729 -0.3034 2.3103 28 1 5.5698 -1.5624 3.2839 29 1 6.4662 -0.7434 1.9826 30 1 5.6817 -3.9645 0.5032 31 1 6.9850 -2.9031 1.0889 32 1 7.3312 -6.4896 4.1105 33 1 1.6951 -2.8996 -1.0063 34 1 2.6699 -3.1963 0.4532 35 1 0.9780 -2.6645 0.6057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140856839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = 41.359310 kcal Electronic energy + Delta-G solvation = -15196.830020 eV Core-core repulsion = 12809.395907 eV Total energy + Delta-G solvation = -2387.434113 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96088 -36.58022 -32.87969 -32.55006 -31.06373 -28.38385 -27.26122 -26.18461 -25.29467 -23.10624 -20.34156 -19.27542 -18.35516 -17.19541 -16.59823 -15.00940 -14.63336 -14.34308 -13.85111 -13.49411 -13.30859 -12.58901 -12.46985 -12.42812 -12.34091 -12.16723 -11.83717 -11.68427 -11.37854 -11.23316 -10.98785 -10.70772 -10.68776 -10.23733 -9.84686 -9.29338 -8.57494 -8.09127 -7.58773 -7.35975 -6.04398 -4.01784 2.53471 3.22705 3.27858 3.36030 3.37434 3.59082 4.42066 4.95522 5.23219 5.27495 5.33108 5.52741 5.54579 5.68861 5.88354 5.90006 5.98696 6.06608 6.10631 6.19665 6.22257 6.29379 6.59748 6.63884 6.72406 6.81783 6.81897 6.97827 7.40423 7.51476 7.60971 7.84740 7.93277 8.03784 8.66191 9.04905 9.57015 11.08748 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.043643 B = 0.006517 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.420464 B = 4295.220887 C = 4436.440650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.171 4.171 3 C -0.025 4.025 4 N -0.560 5.560 5 H 0.408 0.592 6 C 0.034 3.966 7 C 0.120 3.880 8 N -0.520 5.520 9 C 0.040 3.960 10 C 0.161 3.839 11 C -0.507 4.507 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.267 1.267 19 C -0.140 4.140 20 C -0.081 4.081 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.156 0.844 25 H 0.087 0.913 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.009 0.991 30 H 0.030 0.970 31 H -0.017 1.017 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 11.970 -9.501 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.179 4.179 3 C -0.156 4.156 4 N -0.155 5.155 5 H 0.243 0.757 6 C -0.078 4.078 7 C -0.009 4.009 8 N -0.244 5.244 9 C -0.109 4.109 10 C 0.035 3.965 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.702 3.298 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.147 4.147 20 C -0.138 4.138 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.173 0.827 25 H 0.105 0.895 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.000 1.000 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.402 11.707 -9.236 16.648 hybrid contribution 1.855 0.336 -0.869 2.076 sum -5.547 12.043 -10.106 16.671 Atomic orbital electron populations 1.20050 0.90835 1.01521 1.00782 1.19399 0.95170 0.92461 1.10846 1.21421 0.82877 0.98526 1.12744 1.41836 1.07482 1.06564 1.59607 0.75655 1.20155 0.96417 0.82031 1.09243 1.20517 0.91182 0.95633 0.93586 1.61890 1.49444 1.08648 1.04427 1.22220 0.95949 0.94059 0.98641 1.20236 0.88478 0.88744 0.99010 1.21020 1.24206 1.11734 0.97615 0.90074 1.24892 0.96726 0.96305 0.95384 1.69893 1.40022 1.20895 1.23116 0.86873 0.81366 0.78233 0.83323 1.20453 1.21121 1.19156 1.19130 0.91216 0.95277 1.09060 1.20138 1.01514 0.91869 1.00279 0.92709 0.92854 0.92120 0.82706 0.89524 0.95698 0.93644 0.90159 0.97286 0.95205 0.99954 0.92672 0.93235 0.90348 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.22 36.00 0.37 -0.51 16 2 C -0.17 -2.50 6.14 -104.82 -0.64 -3.15 16 3 C -0.03 -0.33 11.85 -16.75 -0.20 -0.53 16 4 N -0.56 -7.52 6.08 -9.12 -0.06 -7.57 16 5 H 0.41 4.36 8.96 -40.82 -0.37 4.00 16 6 C 0.03 0.55 5.79 -81.79 -0.47 0.08 16 7 C 0.12 2.09 4.94 -4.98 -0.02 2.07 16 8 N -0.52 -10.95 4.66 -245.83 -1.14 -12.10 16 9 C 0.04 0.78 9.19 60.06 0.55 1.34 16 10 C 0.16 3.89 3.78 -4.98 -0.02 3.87 16 11 C -0.51 -14.40 9.06 -34.44 -0.31 -14.71 16 12 H 0.08 2.52 7.35 -52.48 -0.39 2.14 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 15 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 19 C -0.14 -2.32 6.14 -104.82 -0.64 -2.97 16 20 C -0.08 -1.30 10.01 36.01 0.36 -0.94 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 24 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 25 H 0.09 1.50 7.81 -51.93 -0.41 1.09 16 26 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 27 H 0.04 0.81 7.42 -51.93 -0.39 0.42 16 28 H 0.08 1.75 6.84 -51.93 -0.36 1.40 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.03 0.72 6.92 -51.93 -0.36 0.36 16 31 H -0.02 -0.41 7.55 -51.93 -0.39 -0.81 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.44 7.72 -51.93 -0.40 1.04 16 35 H 0.05 0.82 7.51 -51.93 -0.39 0.43 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -31.27 288.03 -7.41 -38.69 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.53 Total: 0.27 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.13 Total: -13.55 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.43 Total: -46.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.27 -7.41 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140856839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.044 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds