Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34856 * 126.29543 * 2 1 4 4 N 1.36336 * 108.22296 * 180.02562 * 3 2 1 5 5 H 0.96993 * 125.64134 * 179.97438 * 4 3 2 6 6 C 1.36351 * 108.72557 * 359.97438 * 4 3 2 7 7 C 1.50696 * 125.88833 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.46962 * 105.06326 * 7 6 4 9 9 C 1.46896 * 111.00159 * 287.93853 * 8 7 6 10 10 C 1.46901 * 110.99984 * 163.98471 * 8 7 6 11 11 C 1.50699 * 109.47384 * 190.00289 * 10 8 7 12 12 H 1.08004 * 119.99695 * 359.97438 * 11 10 8 13 13 C 1.37870 * 120.00436 * 179.97438 * 11 10 8 14 14 N 1.31518 * 120.00538 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99886 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47160 * 90.00210 * 15 13 11 17 17 H 1.48504 * 109.47344 * 210.00064 * 15 13 11 18 18 H 1.48497 * 109.46988 * 329.99836 * 15 13 11 19 19 C 1.34846 * 108.21641 * 359.72750 * 6 4 3 20 20 C 1.50709 * 126.29031 * 180.29814 * 19 6 4 21 21 H 1.09002 * 109.47017 * 90.01929 * 1 2 3 22 22 H 1.09003 * 109.46650 * 330.02594 * 1 2 3 23 23 H 1.08993 * 109.46999 * 210.02398 * 1 2 3 24 24 H 1.08005 * 125.88386 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.47357 * 225.06504 * 7 6 4 26 26 H 1.09006 * 109.47456 * 345.06549 * 7 6 4 27 27 H 1.09000 * 109.47029 * 56.64466 * 9 8 7 28 28 H 1.09002 * 109.47376 * 176.64312 * 9 8 7 29 29 H 1.08997 * 109.47272 * 296.64176 * 9 8 7 30 30 H 1.09005 * 109.46929 * 309.99693 * 10 8 7 31 31 H 1.09000 * 109.47145 * 69.99803 * 10 8 7 32 32 H 0.96997 * 120.00144 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.46736 * 265.18844 * 20 19 6 34 34 H 1.09001 * 109.46776 * 25.18848 * 20 19 6 35 35 H 1.08992 * 109.46947 * 145.19330 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6640 -0.0006 5 1 4.3832 1.2380 -0.0011 6 6 3.6169 -0.6995 -0.0004 7 6 4.8478 -1.5689 -0.0014 8 7 5.0413 -2.1451 1.3359 9 6 5.4916 -1.1227 2.2897 10 6 5.9804 -3.2739 1.2919 11 6 5.9676 -3.9901 2.6178 12 1 5.3263 -3.6412 3.4138 13 6 6.7745 -5.0905 2.8148 14 7 6.7638 -5.7152 3.9721 15 14 7.8832 -5.6943 1.4379 16 1 9.2027 -5.0198 1.5331 17 1 8.0680 -7.1628 1.5590 18 1 7.2601 -5.3803 0.1271 19 6 2.3409 -1.1356 0.0064 20 6 1.8897 -2.5735 0.0154 21 1 -0.3633 -0.0003 -1.0277 22 1 -0.3633 0.8903 0.5135 23 1 -0.3633 -0.8897 0.5142 24 1 1.9747 2.1151 -0.0004 25 1 4.7251 -2.3715 -0.7286 26 1 5.7172 -0.9675 -0.2672 27 1 4.7729 -0.3034 2.3103 28 1 5.5698 -1.5624 3.2839 29 1 6.4662 -0.7434 1.9826 30 1 5.6817 -3.9645 0.5032 31 1 6.9850 -2.9031 1.0889 32 1 7.3312 -6.4896 4.1105 33 1 1.6951 -2.8996 -1.0063 34 1 2.6699 -3.1963 0.4532 35 1 0.9780 -2.6645 0.6057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140856839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = 20.174990 kcal Electronic energy + Delta-G solvation = -15197.748641 eV Core-core repulsion = 12809.395907 eV Total energy + Delta-G solvation = -2388.352734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07053 -38.22460 -34.68841 -33.94588 -32.36684 -30.13045 -28.77053 -27.25862 -26.76027 -24.72797 -22.14818 -20.39676 -19.50798 -19.01303 -18.02921 -16.69485 -16.26030 -16.05545 -15.18442 -14.90488 -14.64318 -14.39877 -13.84293 -13.53561 -13.46183 -13.41204 -13.39016 -13.08883 -12.92859 -12.58788 -12.55170 -12.43405 -12.12024 -11.81315 -11.78044 -11.44919 -10.78201 -9.17866 -9.05490 -8.67687 -8.26858 -6.30500 1.35163 1.37473 1.40792 1.48539 2.08487 2.35517 2.55473 3.06204 3.41857 4.00427 4.22957 4.37015 4.43642 4.51877 4.54933 4.63997 4.66737 4.82499 4.88395 4.95621 4.97424 4.98914 5.08391 5.15638 5.31578 5.37328 5.51801 5.59143 5.63685 5.97380 6.23315 6.33933 6.42389 6.64492 6.75809 6.92030 7.32987 8.89916 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.043643 B = 0.006517 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.420464 B = 4295.220887 C = 4436.440650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.197 4.197 3 C -0.008 4.008 4 N -0.551 5.551 5 H 0.422 0.578 6 C 0.012 3.988 7 C 0.125 3.875 8 N -0.538 5.538 9 C 0.049 3.951 10 C 0.172 3.828 11 C -0.515 4.515 12 H 0.035 0.965 13 C 0.008 3.992 14 N -0.949 5.949 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.247 1.247 19 C -0.164 4.164 20 C -0.076 4.076 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.193 0.807 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.033 0.967 31 H -0.011 1.011 32 H 0.267 0.733 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 13.722 -11.685 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.204 4.204 3 C -0.139 4.139 4 N -0.147 5.147 5 H 0.260 0.740 6 C -0.101 4.101 7 C -0.003 4.003 8 N -0.262 5.262 9 C -0.100 4.100 10 C 0.045 3.955 11 C -0.553 4.553 12 H 0.053 0.947 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.771 3.229 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.170 1.170 19 C -0.171 4.171 20 C -0.133 4.133 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.210 0.790 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.007 0.993 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.319 13.494 -11.432 19.140 hybrid contribution 1.718 -0.128 -0.125 1.728 sum -5.600 13.365 -11.557 18.535 Atomic orbital electron populations 1.20070 0.89199 1.02019 1.01621 1.19772 0.96632 0.92201 1.11754 1.22022 0.82184 0.99841 1.09867 1.41829 1.08468 1.05652 1.58772 0.74028 1.19917 0.95664 0.83271 1.11237 1.20443 0.92608 0.96043 0.91206 1.61754 1.48693 1.08827 1.06918 1.22088 0.97257 0.93913 0.96695 1.19979 0.89504 0.89721 0.96276 1.21238 1.23237 1.12300 0.98543 0.94667 1.25850 0.98498 0.96411 0.98192 1.70056 1.41479 1.21752 1.25721 0.85708 0.79239 0.77624 0.80322 1.19280 1.20759 1.17028 1.19416 0.92213 0.95835 1.09626 1.20055 1.00564 0.91857 1.00855 0.91658 0.91084 0.92930 0.78981 0.89736 0.93859 0.91738 0.93532 0.95914 0.94944 0.99300 0.92452 0.91932 0.93324 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.22 71.23 0.73 -0.79 16 2 C -0.20 -5.28 6.14 -19.99 -0.12 -5.40 16 3 C -0.01 -0.18 11.85 83.22 0.99 0.81 16 4 N -0.55 -13.14 6.08 -182.76 -1.11 -14.25 16 5 H 0.42 7.56 8.96 -92.71 -0.83 6.73 16 6 C 0.01 0.36 5.79 41.08 0.24 0.60 16 7 C 0.13 4.19 4.94 85.56 0.42 4.62 16 8 N -0.54 -22.54 4.66 -931.66 -4.34 -26.88 16 9 C 0.05 1.91 9.19 127.69 1.17 3.08 16 10 C 0.17 8.25 3.78 85.56 0.32 8.57 16 11 C -0.51 -30.09 9.06 25.60 0.23 -29.86 16 12 H 0.04 2.32 7.35 -2.91 -0.02 2.30 16 13 C 0.01 0.44 5.47 84.65 0.46 0.91 16 14 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 15 Si 0.95 43.94 27.47 68.60 1.88 45.83 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 19 C -0.16 -5.24 6.14 -19.99 -0.12 -5.36 16 20 C -0.08 -2.44 10.01 71.24 0.71 -1.73 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.17 7.47 -2.39 -0.02 1.16 16 24 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 25 H 0.08 2.83 7.81 -2.39 -0.02 2.81 16 26 H 0.04 1.29 8.05 -2.38 -0.02 1.27 16 27 H 0.06 2.23 7.42 -2.39 -0.02 2.22 16 28 H 0.05 2.11 6.84 -2.39 -0.02 2.09 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 1.54 6.92 -2.38 -0.02 1.52 16 31 H -0.01 -0.49 7.55 -2.39 -0.02 -0.51 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.82 7.72 -2.39 -0.02 1.81 16 35 H 0.06 1.77 7.51 -2.39 -0.02 1.75 16 Total: -1.00 -68.91 288.03 1.95 -66.96 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.18 Total: 12.47 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 5.03 Total: -24.54 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -5.15 Total: -100.71 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -68.91 1.95 -66.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140856839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.132 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds