Wall clock time and date at job start Sun Mar 29 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 110.99746 * 2 1 4 4 C 1.50700 * 109.47327 * 66.04708 * 3 2 1 5 5 H 1.08006 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00184 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00072 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99646 * 179.97438 * 6 4 3 9 9 H 1.48488 * 109.47454 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46866 * 120.00190 * 8 6 4 11 11 H 1.48502 * 109.46932 * 239.99783 * 8 6 4 12 12 C 1.46902 * 111.00304 * 236.05034 * 2 1 3 13 13 C 1.50706 * 109.46577 * 293.95012 * 12 2 1 14 14 C 1.38248 * 119.55390 * 94.99963 * 13 12 2 15 15 C 1.38542 * 119.22097 * 179.97438 * 14 13 12 16 16 C 1.39138 * 118.36983 * 0.02562 * 15 14 13 17 17 O 1.35914 * 120.47099 * 180.02562 * 16 15 14 18 18 C 1.38704 * 119.05576 * 359.97438 * 16 15 14 19 19 N 1.31843 * 119.55399 * 274.72430 * 13 12 2 20 20 H 1.09003 * 109.47237 * 183.95504 * 1 2 3 21 21 H 1.08998 * 109.47394 * 303.94903 * 1 2 3 22 22 H 1.09003 * 109.47554 * 63.95496 * 1 2 3 23 23 H 1.09000 * 109.47307 * 186.04517 * 3 2 1 24 24 H 1.08997 * 109.47179 * 306.04929 * 3 2 1 25 25 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46894 * 173.95246 * 12 2 1 27 27 H 1.09000 * 109.47263 * 53.94812 * 12 2 1 28 28 H 1.08000 * 120.39285 * 359.95439 * 14 13 12 29 29 H 1.08000 * 120.81354 * 180.02562 * 15 14 13 30 30 H 0.96700 * 114.00016 * 89.99323 * 17 16 15 31 31 H 1.08002 * 119.65672 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0489 6 6 2.0275 3.3492 1.5289 7 7 2.7126 4.0016 0.6154 8 14 1.5824 4.1869 3.1382 9 1 0.8144 3.2446 3.9909 10 1 2.8239 4.5935 3.8444 11 1 0.7558 5.3885 2.8586 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.5013 -2.7164 -1.5855 15 6 0.1785 -4.0547 -1.4299 16 6 1.0171 -4.8514 -0.6565 17 8 0.7413 -6.1700 -0.4759 18 6 2.1389 -4.2811 -0.0734 19 7 2.4136 -3.0038 -0.2508 20 1 -0.3634 -1.0252 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3634 0.4512 -0.9233 23 1 3.0796 1.3445 -0.1082 24 1 1.5609 1.9274 -0.8308 25 1 2.9877 4.9175 0.7777 26 1 3.0797 -0.6609 -1.1756 27 1 1.5611 -0.3872 -2.0628 28 1 -0.1272 -2.0683 -2.1783 29 1 -0.7023 -4.4694 -1.8974 30 1 1.1362 -6.7492 -1.1420 31 1 2.7967 -4.8906 0.5284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144253207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:27 Heat of formation + Delta-G solvation = -27.328071 kcal Electronic energy + Delta-G solvation = -14564.924923 eV Core-core repulsion = 12038.679207 eV Total energy + Delta-G solvation = -2526.245716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45499 -38.76168 -37.64551 -34.73552 -33.22247 -31.98187 -29.16421 -28.13098 -25.86226 -24.57332 -23.31850 -21.90960 -19.41437 -18.58758 -17.85250 -17.15006 -16.81987 -16.35039 -16.06359 -15.71870 -15.08921 -14.60843 -14.20214 -14.08931 -13.84487 -13.37180 -13.22631 -12.86499 -12.65100 -12.60001 -12.38064 -12.20539 -11.83982 -11.31194 -10.79773 -10.62409 -10.26298 -9.76276 -9.01589 -8.20523 -6.30405 0.00350 0.28877 1.40773 1.42061 1.55571 2.40119 2.63796 3.06545 3.12072 3.42651 3.49298 3.83683 3.92746 4.10834 4.37768 4.43311 4.56437 4.67821 4.73679 4.80272 5.02955 5.04305 5.14711 5.16516 5.29319 5.60384 5.64682 6.03639 6.30366 6.58195 6.76309 6.84899 7.08652 7.39031 8.90761 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.055743 B = 0.005458 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.181561 B = 5129.312154 C = 5216.896171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.102 3.898 13 C 0.120 3.880 14 C -0.147 4.147 15 C -0.098 4.098 16 C 0.056 3.944 17 O -0.496 6.496 18 C 0.066 3.934 19 N -0.486 5.486 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.024 0.976 23 H 0.004 0.996 24 H -0.028 1.028 25 H 0.265 0.735 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.414 0.586 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -17.354 -6.165 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.271 5.271 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.201 1.201 12 C -0.026 4.026 13 C -0.018 4.018 14 C -0.167 4.167 15 C -0.124 4.124 16 C 0.009 3.991 17 O -0.309 6.309 18 C -0.093 4.093 19 N -0.197 5.197 20 H 0.086 0.914 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.022 0.978 24 H -0.011 1.011 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.273 0.727 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.742 -16.886 -4.915 18.215 hybrid contribution -0.535 0.637 -0.788 1.146 sum -5.277 -16.249 -5.703 18.011 Atomic orbital electron populations 1.22222 0.87370 1.00746 1.00337 1.61937 1.08403 1.15455 1.41294 1.19402 0.93749 0.83182 0.95375 1.21468 1.34931 0.97490 1.02328 0.92253 1.25885 0.94950 0.97956 1.00685 1.70081 1.39282 1.11933 1.36090 0.85329 0.78091 0.78196 0.78958 1.19031 1.20406 1.20066 1.20906 1.00541 0.88451 0.92720 1.21112 0.92220 0.95157 0.93315 1.22111 0.97121 0.96438 1.01034 1.22165 1.00347 0.93295 0.96582 1.19495 0.94851 0.86312 0.98428 1.84791 1.76662 1.13245 1.56173 1.23456 0.95931 0.91200 0.98697 1.67451 1.32344 1.05430 1.14425 0.91386 0.92529 0.95791 0.97833 1.01064 0.92604 0.91242 0.92530 0.82809 0.81272 0.72650 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.02 127.69 1.15 2.79 16 2 N -0.55 -24.92 4.74 -931.66 -4.42 -29.34 16 3 C 0.21 11.47 4.72 85.56 0.40 11.87 16 4 C -0.52 -30.58 8.46 25.60 0.22 -30.37 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.19 5.46 84.66 0.46 0.65 16 7 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 8 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.10 3.88 5.28 85.56 0.45 4.33 16 13 C 0.12 3.90 5.64 42.56 0.24 4.14 16 14 C -0.15 -3.62 8.35 22.34 0.19 -3.43 16 15 C -0.10 -1.97 10.13 22.56 0.23 -1.75 16 16 C 0.06 1.21 6.74 22.60 0.15 1.36 16 17 O -0.50 -8.07 13.53 -92.58 -1.25 -9.32 16 18 C 0.07 1.73 11.14 84.80 0.94 2.67 16 19 N -0.49 -16.55 10.27 -183.49 -1.88 -18.43 16 20 H 0.07 2.32 6.40 -2.39 -0.02 2.31 16 21 H 0.06 2.43 6.76 -2.39 -0.02 2.42 16 22 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 24 H -0.03 -1.63 8.12 -2.39 -0.02 -1.65 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.07 2.82 7.93 -2.39 -0.02 2.80 16 27 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 28 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.41 2.24 9.06 -74.06 -0.67 1.57 16 31 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -71.50 269.60 -0.35 -71.85 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 0.46 Total: 2.32 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.44 Total: -7.73 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -6.02 Total: -104.28 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.25 Total: -9.32 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.50 -0.35 -71.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144253207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.519 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds