Wall clock time and date at job start Sun Mar 29 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42896 * 109.47231 * 240.00235 * 2 1 3 5 5 C 1.35690 * 116.99985 * 269.99955 * 4 2 1 6 6 C 1.38618 * 119.63960 * 179.97438 * 5 4 2 7 7 C 1.39324 * 119.00338 * 180.02562 * 6 5 4 8 8 N 1.38999 * 120.84580 * 179.97438 * 7 6 5 9 9 C 1.36882 * 119.99644 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.38834 * 119.99356 * 179.97438 * 9 8 7 12 12 N 1.31559 * 120.00649 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99784 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47266 * 89.99814 * 13 11 9 15 15 H 1.48496 * 109.47438 * 210.00141 * 13 11 9 16 16 H 1.48506 * 109.47138 * 330.00087 * 13 11 9 17 17 C 1.39749 * 118.30599 * 359.97438 * 7 6 5 18 18 C 1.37751 * 119.18109 * 0.02562 * 17 7 6 19 19 N 1.32076 * 120.92716 * 359.72708 * 18 17 7 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.07998 * 120.49772 * 0.02562 * 6 5 4 28 28 H 0.96998 * 119.99880 * 359.97438 * 8 7 6 29 29 H 0.96994 * 120.00184 * 179.97438 * 12 11 9 30 30 H 1.08003 * 120.40796 * 179.97438 * 17 7 6 31 31 H 1.08000 * 119.53491 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 -2.0110 -1.0653 6 6 2.6728 -2.7191 -2.1641 7 6 2.8785 -4.0919 -2.0453 8 7 3.3395 -4.8394 -3.1228 9 6 3.5360 -6.1871 -2.9866 10 1 3.3326 -6.6698 -2.0421 11 6 3.9959 -6.9337 -4.0630 12 7 4.2422 -6.3460 -5.2140 13 14 4.2635 -8.7731 -3.8774 14 1 3.0139 -9.4933 -4.2310 15 1 5.3581 -9.2079 -4.7818 16 1 4.6312 -9.0806 -2.4719 17 6 2.6097 -4.6983 -0.8153 18 6 2.1536 -3.9248 0.2294 19 7 1.9742 -2.6245 0.0833 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 2.8696 -2.2142 -3.0983 28 1 3.5218 -4.4059 -3.9712 29 1 4.5639 -6.8676 -5.9658 30 1 2.7569 -5.7603 -0.6856 31 1 1.9437 -4.3876 1.1823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:30 Heat of formation + Delta-G solvation = -13.658826 kcal Electronic energy + Delta-G solvation = -14597.251230 eV Core-core repulsion = 12071.598257 eV Total energy + Delta-G solvation = -2525.652973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60181 -37.69151 -35.39053 -32.79815 -32.26547 -29.29858 -28.82361 -27.05669 -24.97738 -22.55053 -22.10364 -20.22116 -18.07013 -17.71640 -15.88163 -15.26864 -14.95787 -14.58530 -14.49473 -14.03316 -13.36173 -13.26370 -12.81632 -12.67734 -12.15985 -12.04074 -11.75361 -11.67002 -11.39292 -11.11484 -10.85009 -10.56656 -10.44482 -10.19957 -10.14117 -9.03280 -8.52702 -7.61699 -7.17971 -6.67734 -3.90831 2.32750 2.60978 3.11559 3.13106 3.15413 3.69436 3.99168 4.70648 5.09285 5.14272 5.17006 5.26622 5.30309 5.52126 5.68193 5.81839 5.90011 6.03139 6.20195 6.29208 6.36762 6.38811 6.45924 6.70876 6.95685 7.21263 7.28901 7.37015 7.69612 8.24213 8.63884 9.05275 9.19606 9.40089 10.48401 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.063817 B = 0.005681 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.647440 B = 4927.105151 C = 5214.451858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.084 3.916 3 C -0.149 4.149 4 O -0.312 6.312 5 C 0.350 3.650 6 C -0.314 4.314 7 C 0.249 3.751 8 N -0.539 5.539 9 C -0.307 4.307 10 H 0.105 0.895 11 C 0.024 3.976 12 N -0.887 5.887 13 Si 0.935 3.065 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.292 4.292 18 C 0.159 3.841 19 N -0.625 5.625 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.402 0.598 29 H 0.277 0.723 30 H 0.123 0.877 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 6.847 7.210 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.027 3.973 3 C -0.206 4.206 4 O -0.221 6.221 5 C 0.175 3.825 6 C -0.344 4.344 7 C 0.120 3.880 8 N -0.141 5.141 9 C -0.437 4.437 10 H 0.123 0.877 11 C -0.181 4.181 12 N -0.524 5.524 13 Si 0.761 3.239 14 H -0.201 1.201 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.321 4.321 18 C 0.008 3.992 19 N -0.356 5.356 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.237 0.763 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.640 7.152 7.384 10.905 hybrid contribution 0.472 -1.284 -0.996 1.692 sum -3.168 5.868 6.388 9.234 Atomic orbital electron populations 1.22182 0.95771 1.02773 1.01532 1.22097 0.93783 0.92167 0.89281 1.21888 1.01782 0.94772 1.02197 1.86216 1.80807 1.17503 1.37590 1.19115 0.90693 0.82995 0.89738 1.19827 1.22196 0.92782 0.99555 1.17602 0.92406 0.89432 0.88598 1.40968 1.56067 1.07233 1.09847 1.19790 1.41856 0.82650 0.99413 0.87719 1.25360 0.96796 1.01201 0.94721 1.69671 1.43252 1.37461 1.02014 0.85774 0.78279 0.81173 0.78663 1.20088 1.20602 1.19168 1.21185 1.16012 1.00991 0.93886 1.21646 0.92586 0.87932 0.97077 1.67065 1.31533 1.12431 1.24603 0.91964 0.92588 0.91849 0.89461 0.92097 0.91196 0.92112 0.86629 0.76291 0.91296 0.85914 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.53 37.16 0.35 -1.89 16 2 C 0.08 1.28 3.11 -26.73 -0.08 1.19 16 3 C -0.15 -1.78 9.56 37.16 0.36 -1.42 16 4 O -0.31 -5.97 9.76 -18.77 -0.18 -6.15 16 5 C 0.35 7.41 7.45 -17.18 -0.13 7.28 16 6 C -0.31 -7.00 9.93 -39.04 -0.39 -7.39 16 7 C 0.25 5.80 6.66 -83.64 -0.56 5.24 16 8 N -0.54 -13.38 5.43 -9.44 -0.05 -13.43 16 9 C -0.31 -7.79 9.58 -15.08 -0.14 -7.93 16 10 H 0.11 2.54 5.76 -52.49 -0.30 2.24 16 11 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 12 N -0.89 -23.39 13.05 55.49 0.72 -22.66 16 13 Si 0.93 19.43 29.55 -169.99 -5.02 14.40 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 C -0.29 -6.29 9.36 -39.20 -0.37 -6.66 16 18 C 0.16 3.11 11.16 -17.62 -0.20 2.91 16 19 N -0.62 -12.74 8.64 -13.43 -0.12 -12.86 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.09 1.41 6.97 -51.93 -0.36 1.05 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 28 H 0.40 10.12 7.92 -40.82 -0.32 9.79 16 29 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.12 2.56 6.08 -52.48 -0.32 2.24 16 31 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -27.24 269.61 -5.66 -32.90 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -3.82 Total: 11.91 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.25 Total: -8.17 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.56 Total: -48.95 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.18 Total: -6.15 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.24 -5.66 -32.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.238 kcal (2) G-P(sol) polarization free energy of solvation -27.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds