Wall clock time and date at job start Sun Mar 29 2020 22:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47005 * 239.99940 * 3 2 1 5 5 H 1.48504 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46989 * 119.99916 * 3 2 1 7 7 C 1.37875 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47052 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47201 * 180.02562 * 11 10 9 13 13 C 1.39360 * 119.99739 * 179.97438 * 12 11 10 14 14 C 1.39579 * 120.08050 * 359.97438 * 13 12 11 15 15 C 1.38355 * 117.96763 * 180.02562 * 14 13 12 16 16 C 1.39580 * 117.96123 * 0.02562 * 15 14 13 17 17 N 1.39360 * 120.07604 * 179.97438 * 16 15 14 18 18 N 1.32273 * 119.85451 * 359.97438 * 16 15 14 19 19 N 1.28344 * 122.18251 * 0.02562 * 18 16 15 20 20 H 0.97003 * 120.00187 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47466 * 59.99493 * 9 7 2 22 22 H 1.09005 * 109.46935 * 299.99536 * 9 7 2 23 23 H 1.08999 * 109.47338 * 59.99974 * 10 9 7 24 24 H 1.09002 * 109.47407 * 299.99415 * 10 9 7 25 25 H 1.08994 * 109.47604 * 59.99715 * 11 10 9 26 26 H 1.09005 * 109.47162 * 299.99911 * 11 10 9 27 27 H 0.96993 * 119.99760 * 359.97438 * 12 11 10 28 28 H 1.08002 * 121.01509 * 359.97438 * 14 13 12 29 29 H 1.08002 * 121.02042 * 180.02562 * 15 14 13 30 30 H 0.96996 * 120.00700 * 180.02562 * 17 16 15 31 31 H 0.97002 * 119.99866 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9676 -7.4145 0.0030 14 6 0.5957 -7.6714 0.0041 15 6 0.1828 -8.9919 0.0058 16 6 1.1642 -9.9844 0.0069 17 7 0.7977 -11.3290 0.0091 18 7 2.4429 -9.6460 0.0057 19 7 2.8259 -8.4211 0.0041 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8719 -3.6043 0.8905 24 1 2.8719 -3.6044 -0.8895 25 1 0.8532 -5.0451 -0.8885 26 1 0.8539 -5.0445 0.8914 27 1 3.3858 -5.9234 0.0014 28 1 -0.1217 -6.8640 0.0045 29 1 -0.8667 -9.2469 0.0064 30 1 1.4805 -12.0179 0.0102 31 1 -0.1403 -11.5759 0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427263.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:54 Heat of formation + Delta-G solvation = 25.628381 kcal Electronic energy + Delta-G solvation = -13998.924751 eV Core-core repulsion = 11507.268150 eV Total energy + Delta-G solvation = -2491.656601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75210 -38.05581 -36.12377 -35.27507 -33.70348 -32.71628 -30.19898 -27.92876 -25.57149 -24.99125 -23.32114 -22.07116 -19.23338 -18.48493 -18.24741 -17.91271 -16.58702 -16.50857 -16.47073 -15.77095 -15.45954 -14.87247 -14.27812 -14.16064 -13.92002 -13.68992 -12.86863 -12.54647 -12.52270 -12.48752 -12.28904 -11.66935 -11.45162 -11.19935 -11.19060 -10.52908 -10.37322 -10.14187 -8.30546 -8.19138 -6.29177 -0.00824 0.55958 1.42250 1.44243 1.52091 2.11992 2.43017 2.76354 2.85914 3.14869 3.68060 3.84442 3.90539 4.15979 4.22620 4.26336 4.60380 4.74224 4.94104 4.98213 4.99160 5.17295 5.19266 5.52755 5.75142 5.86330 6.08938 6.27564 6.39741 6.68718 6.87445 6.95835 7.39905 8.12793 8.92300 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.091185 B = 0.004043 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.996009 B = 6924.083315 C = 7205.330013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.106 4.106 11 C 0.140 3.860 12 N -0.719 5.719 13 C 0.290 3.710 14 C -0.144 4.144 15 C -0.123 4.123 16 C 0.285 3.715 17 N -0.835 5.835 18 N -0.313 5.313 19 N -0.316 5.316 20 H 0.264 0.736 21 H -0.001 1.001 22 H 0.000 1.000 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.406 0.594 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.409 0.591 31 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -18.527 0.015 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.144 4.144 11 C 0.016 3.984 12 N -0.356 5.356 13 C 0.044 3.956 14 C -0.177 4.177 15 C -0.156 4.156 16 C 0.036 3.964 17 N -0.386 5.386 18 N -0.161 5.161 19 N -0.164 5.164 20 H 0.072 0.928 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.241 0.759 28 H 0.180 0.820 29 H 0.202 0.798 30 H 0.239 0.761 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.736 -18.736 0.015 18.750 hybrid contribution -0.894 1.268 -0.002 1.551 sum -1.630 -17.468 0.014 17.544 Atomic orbital electron populations 1.70066 1.07618 1.27823 1.51591 1.25913 0.95755 1.03146 0.94799 0.85561 0.78327 0.78429 0.79097 1.19336 1.20885 1.19324 1.21674 0.93594 0.92474 1.50632 0.92274 1.18909 0.94261 0.92245 0.95572 1.21581 0.98696 0.92683 1.01448 1.21383 0.91573 0.84194 1.01245 1.44445 1.09622 1.00343 1.81162 1.20161 0.91511 0.87797 0.96110 1.22045 0.94600 0.98978 1.02056 1.22047 1.02041 0.90843 1.00674 1.20128 0.91188 0.88825 0.96253 1.41846 1.11583 1.00951 1.84194 1.72505 1.15240 1.09737 1.18621 1.72567 1.30707 0.94033 1.19129 0.92751 0.98218 0.98208 0.92337 0.92330 0.91829 0.91837 0.75902 0.81962 0.79836 0.76145 0.74593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.38 4.97 29.84 0.15 1.53 16 10 C -0.11 -4.02 5.27 30.59 0.16 -3.86 16 11 C 0.14 4.34 4.92 86.38 0.43 4.77 16 12 N -0.72 -21.39 5.74 -344.44 -1.98 -23.37 16 13 C 0.29 8.72 7.75 133.08 1.03 9.75 16 14 C -0.14 -3.44 9.41 22.62 0.21 -3.23 16 15 C -0.12 -2.35 10.05 22.62 0.23 -2.13 16 16 C 0.28 6.37 7.86 133.09 1.05 7.41 16 17 N -0.83 -11.02 9.10 -54.99 -0.50 -11.52 16 18 N -0.31 -9.51 11.52 -54.95 -0.63 -10.14 16 19 N -0.32 -10.54 11.52 -54.95 -0.63 -11.17 16 20 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 21 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 22 H 0.00 -0.03 8.14 -2.38 -0.02 -0.04 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 26 H 0.06 1.91 7.96 -2.38 -0.02 1.89 16 27 H 0.41 11.83 8.60 -92.71 -0.80 11.04 16 28 H 0.16 3.33 6.84 -2.91 -0.02 3.31 16 29 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.41 4.87 8.96 -92.71 -0.83 4.04 16 31 H 0.42 2.66 8.84 -92.71 -0.82 1.84 16 Total: -1.00 -68.68 272.67 1.24 -67.45 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -1.28 Total: 13.30 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.95 Total: -15.16 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -3.46 Total: -111.15 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.68 1.24 -67.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427263.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.077 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds