Wall clock time and date at job start Sun Mar 29 2020 22:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47282 * 2 1 4 4 C 1.52996 * 109.47308 * 239.99499 * 2 1 3 5 5 C 1.52998 * 109.47492 * 174.26251 * 4 2 1 6 6 C 1.50699 * 109.47137 * 184.68739 * 5 4 2 7 7 H 1.07993 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99598 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00382 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99697 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47377 * 59.99972 * 10 8 6 12 12 H 1.48504 * 109.47259 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47312 * 299.99931 * 10 8 6 14 14 N 1.46906 * 109.47251 * 119.99528 * 2 1 3 15 15 C 1.47958 * 110.99996 * 300.79417 * 14 2 1 16 16 C 1.53936 * 86.30319 * 222.46881 * 15 14 2 17 17 C 1.52997 * 113.73330 * 269.31040 * 16 15 14 18 18 C 1.47199 * 113.73376 * 138.01855 * 16 15 14 19 19 N 5.21976 * 116.62871 * 66.96762 * 2 1 3 20 20 C 1.48177 * 111.07739 * 201.49905 * 14 2 1 21 21 H 1.08999 * 109.46720 * 60.00097 * 1 2 3 22 22 H 1.08999 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46798 * 300.00807 * 1 2 3 24 24 H 1.09001 * 109.47239 * 294.26292 * 4 2 1 25 25 H 1.08998 * 109.46764 * 54.26010 * 4 2 1 26 26 H 1.08995 * 109.47106 * 304.68779 * 5 4 2 27 27 H 1.09006 * 109.47144 * 64.68619 * 5 4 2 28 28 H 0.97003 * 119.99894 * 180.02562 * 9 8 6 29 29 H 1.08998 * 113.76301 * 108.09379 * 15 14 2 30 30 H 1.09000 * 113.75970 * 336.84279 * 15 14 2 31 31 H 1.08998 * 109.47513 * 59.99157 * 17 16 15 32 32 H 1.08998 * 109.47104 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.46504 * 299.99307 * 17 16 15 34 34 H 1.09003 * 113.65765 * 23.13949 * 20 14 2 35 35 H 1.09002 * 113.92859 * 251.82436 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5632 -0.5977 -1.3234 6 6 4.0545 -1.2076 -2.6109 7 1 3.3509 -1.6405 -3.3064 8 6 5.4026 -1.2138 -2.9003 9 7 6.2597 -0.6880 -2.0527 10 14 6.0117 -1.9705 -4.4959 11 1 5.4010 -1.2577 -5.6466 12 1 7.4902 -1.8503 -4.5680 13 1 5.6283 -3.4043 -4.5418 14 7 2.0197 -0.6924 1.1995 15 6 1.5297 -0.0325 2.4298 16 6 2.9513 -0.2345 2.9849 17 6 3.1365 -1.5531 3.7384 18 6 3.4695 0.9283 3.7238 19 7 3.8695 1.8256 4.2941 20 6 3.4102 -0.2903 1.5166 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.7630 -1.7744 -1.1992 25 1 1.5952 -0.2703 -2.1361 26 1 3.8443 0.4548 -1.2894 27 1 4.0118 -1.1210 -0.4789 28 1 7.2080 -0.6921 -2.2565 29 1 0.7663 -0.6023 2.9596 30 1 1.2579 1.0135 2.2887 31 1 2.9287 -2.3871 3.0680 32 1 4.1623 -1.6240 4.1000 33 1 2.4502 -1.5875 4.5846 34 1 3.6891 0.6803 1.1065 35 1 4.1508 -1.0649 1.3170 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492275.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:04 Heat of formation + Delta-G solvation = 45.384940 kcal Electronic energy + Delta-G solvation = -15246.968154 eV Core-core repulsion = 12859.708605 eV Total energy + Delta-G solvation = -2387.259549 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50939 -36.37529 -34.73328 -32.81016 -30.30080 -29.32029 -26.20460 -25.31225 -24.72264 -22.16749 -20.50268 -19.53509 -16.90922 -16.26576 -15.58728 -14.87035 -14.49496 -14.40632 -13.86875 -13.29730 -13.03706 -12.89753 -12.64320 -12.48406 -12.29065 -11.94082 -11.84392 -11.61779 -11.28918 -11.13033 -10.94764 -10.81403 -10.49643 -10.39028 -10.15711 -9.65909 -9.19530 -8.97194 -8.52721 -8.29186 -5.98070 -3.99150 2.72406 2.83173 3.34417 3.39064 3.41490 3.77930 4.22541 4.47745 4.49066 4.90267 5.00029 5.28252 5.37922 5.41704 5.50185 5.64902 5.71405 5.77677 5.84841 5.96207 6.06266 6.20665 6.21741 6.26518 6.38227 6.55374 6.65175 6.90485 7.18069 7.32001 7.61789 7.69502 7.88505 8.02084 8.46623 9.07235 9.64375 11.12971 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.007229 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.134871 B = 3872.296750 C = 4456.058403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 H 0.044 0.956 4 C -0.101 4.101 5 C 0.016 3.984 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.460 5.460 15 C 0.020 3.980 16 C -0.012 4.012 17 C -0.117 4.117 18 C 0.224 3.776 19 N -0.443 5.443 20 C 0.038 3.962 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.008 0.992 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 -0.972 8.624 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 H 0.062 0.938 4 C -0.139 4.139 5 C -0.021 4.021 6 C -0.557 4.557 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 N -0.183 5.183 15 C -0.110 4.110 16 C -0.017 4.017 17 C -0.176 4.176 18 C -0.094 4.094 19 N -0.117 5.117 20 C -0.091 4.091 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.840 -0.251 9.358 12.876 hybrid contribution 0.495 0.305 -1.136 1.276 sum -8.346 0.054 8.223 11.716 Atomic orbital electron populations 1.21859 0.95158 1.02204 1.00969 1.22371 0.94748 0.96343 0.92817 0.93776 1.21642 0.99944 0.99259 0.93032 1.19300 0.88799 0.96618 0.97403 1.21237 0.92008 1.37893 1.04565 0.92933 1.24991 0.97059 0.95575 0.96717 1.69935 1.02261 1.45514 1.35824 0.86707 0.77544 0.79851 0.84172 1.20387 1.21375 1.20257 1.68661 1.03386 1.45819 1.00425 1.24015 0.94379 0.99414 0.93182 1.20250 0.97680 0.89190 0.94550 1.21527 1.02297 0.93797 0.99938 1.29077 0.93134 0.94148 0.93023 1.81170 1.09016 1.11547 1.10012 1.24228 0.93993 1.02757 0.88136 0.92354 0.91937 0.93489 0.92392 0.93070 0.97375 0.95196 0.93048 0.88345 0.91123 0.89180 0.91776 0.91863 0.90240 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.08 37.16 0.34 -1.52 16 2 C 0.05 0.73 2.00 -67.71 -0.14 0.59 16 3 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 4 C -0.10 -1.99 4.82 -26.73 -0.13 -2.12 16 5 C 0.02 0.38 3.91 -27.88 -0.11 0.27 16 6 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 10 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 N -0.46 -6.73 5.85 -229.16 -1.34 -8.07 16 15 C 0.02 0.24 5.81 -2.77 -0.02 0.22 16 16 C -0.01 -0.15 1.32 -156.35 -0.21 -0.36 16 17 C -0.12 -1.19 9.10 37.16 0.34 -0.86 16 18 C 0.22 3.22 14.53 -20.76 -0.30 2.92 16 19 N -0.44 -7.35 18.54 42.15 0.78 -6.57 16 20 C 0.04 0.60 4.77 -2.64 -0.01 0.58 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.52 6.97 -51.93 -0.36 0.16 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.03 0.75 5.34 -51.93 -0.28 0.47 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 31 H 0.09 0.94 7.99 -51.93 -0.41 0.52 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.08 1.36 7.41 -51.93 -0.38 0.98 16 35 H 0.11 1.94 6.89 -51.93 -0.36 1.58 16 LS Contribution 289.32 15.07 4.36 4.36 Total: -1.00 -30.01 289.32 -6.63 -36.64 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.50 Total: -3.86 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.65 Total: -13.43 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.18 Total: -40.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.01 -6.63 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492275.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.028 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds