Wall clock time and date at job start Sun Mar 29 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08996 * 110.01834 * 104.50398 * 3 2 1 5 5 C 1.54270 * 110.07446 * 343.08644 * 3 2 1 6 6 C 1.54888 * 104.19703 * 264.30541 * 5 3 2 7 7 C 1.54889 * 102.74834 * 322.05750 * 6 5 3 8 8 C 1.53879 * 110.03217 * 225.89724 * 3 2 1 9 9 H 1.09006 * 110.02828 * 359.97438 * 8 3 2 10 10 O 1.42899 * 110.02986 * 238.61960 * 8 3 2 11 11 C 1.42905 * 113.99785 * 150.00178 * 10 8 3 12 12 C 1.52999 * 109.46735 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00302 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47310 * 89.99428 * 18 16 14 20 20 H 1.48491 * 109.47296 * 209.99911 * 18 16 14 21 21 H 1.48502 * 109.46905 * 329.99956 * 18 16 14 22 22 H 4.19604 * 14.90481 * 0.02562 * 4 2 1 23 23 H 1.09011 * 110.48261 * 22.98258 * 5 3 2 24 24 H 1.08992 * 110.48804 * 145.49470 * 5 3 2 25 25 H 1.09005 * 110.75412 * 80.36602 * 6 5 3 26 26 H 1.08989 * 110.75715 * 203.55744 * 6 5 3 27 27 H 1.08997 * 110.48751 * 279.26225 * 7 6 5 28 28 H 1.09005 * 110.48847 * 156.61895 * 7 6 5 29 29 H 1.08993 * 109.47057 * 59.99308 * 11 10 8 30 30 H 1.09000 * 109.46838 * 299.99546 * 11 10 8 31 31 H 1.08993 * 109.47839 * 59.99877 * 12 11 10 32 32 H 1.09000 * 109.47160 * 299.99439 * 12 11 10 33 33 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 34 34 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 35 35 H 0.97002 * 119.99998 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0190 0.2573 -0.9915 5 6 3.1761 -1.3854 0.4216 6 6 3.4464 -1.2430 1.9400 7 6 4.0043 0.1973 2.0543 8 6 3.1726 1.0070 1.0381 9 1 2.3381 1.4952 1.5416 10 8 3.9967 1.9838 0.3987 11 6 3.9823 3.2631 1.0355 12 6 4.8946 4.2238 0.2703 13 6 4.8787 5.5936 0.9518 14 6 5.7779 6.5398 0.1985 15 1 6.3080 6.1982 -0.6782 16 6 5.9238 7.8416 0.6286 17 7 6.7088 8.6672 -0.0284 18 14 5.0075 8.4323 2.1456 19 1 5.8447 8.2024 3.3504 20 1 4.7163 9.8825 2.0145 21 1 3.7332 7.6815 2.2777 22 1 -1.0501 0.0004 0.0003 23 1 2.4244 -2.1533 0.2382 24 1 4.0974 -1.6198 -0.1116 25 1 2.5218 -1.3453 2.5082 26 1 4.1843 -1.9735 2.2712 27 1 5.0607 0.2196 1.7865 28 1 3.8571 0.5847 3.0625 29 1 4.3388 3.1626 2.0605 30 1 2.9650 3.6545 1.0413 31 1 4.5385 4.3243 -0.7549 32 1 5.9118 3.8321 0.2649 33 1 3.8615 5.9851 0.9569 34 1 5.2347 5.4934 1.9772 35 1 6.8112 9.5831 0.2740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205662818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:03 Heat of formation + Delta-G solvation = -20.916820 kcal Electronic energy + Delta-G solvation = -14545.067309 eV Core-core repulsion = 12122.639949 eV Total energy + Delta-G solvation = -2422.427360 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.28228 -36.46405 -33.80198 -32.92252 -31.65308 -28.73072 -28.17270 -26.64722 -22.75065 -21.47512 -20.82703 -20.08416 -18.08237 -16.92397 -16.56395 -15.69763 -15.39043 -14.71291 -14.14656 -13.94176 -13.52774 -13.08161 -12.66952 -12.28698 -12.08417 -11.92524 -11.61889 -11.28515 -11.23753 -10.90610 -10.83087 -10.56797 -10.35379 -10.16194 -10.01405 -9.80359 -9.65353 -9.20943 -9.18404 -8.53186 -6.03298 -4.01476 2.66414 2.72958 3.30935 3.38237 3.41689 3.80857 4.26678 4.45670 4.46773 4.56681 4.84751 5.16101 5.30216 5.32945 5.36902 5.47357 5.55739 5.64219 5.70044 5.73507 5.75424 5.88308 5.98902 6.04033 6.07086 6.16097 6.54234 6.55033 6.88935 7.28442 7.41958 7.50107 7.52816 7.80203 8.55469 9.02078 9.58732 11.10202 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044185 B = 0.004751 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.553291 B = 5892.345132 C = 6005.599944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.171 4.171 3 C 0.011 3.989 4 H 0.108 0.892 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.146 4.146 8 C 0.093 3.907 9 H 0.064 0.936 10 O -0.380 6.380 11 C 0.060 3.940 12 C -0.100 4.100 13 C -0.011 4.011 14 C -0.520 4.520 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.217 0.783 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 -19.503 4.017 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.007 4.007 4 H 0.126 0.874 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.184 4.184 8 C 0.034 3.966 9 H 0.082 0.918 10 O -0.299 6.299 11 C -0.016 4.016 12 C -0.138 4.138 13 C -0.049 4.049 14 C -0.558 4.558 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 H 0.234 0.766 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.596 -19.343 3.849 21.932 hybrid contribution -0.818 0.611 1.012 1.438 sum -10.414 -18.731 4.861 21.976 Atomic orbital electron populations 1.24845 0.95818 1.00997 1.01392 1.22906 0.94004 1.00151 1.00049 1.18938 0.84459 0.95835 1.01487 0.87368 1.22370 1.01197 0.94922 0.96415 1.22441 1.00924 0.96663 0.95992 1.22906 1.01197 0.95147 0.99165 1.22677 0.92669 0.89302 0.91921 0.91764 1.87945 1.67177 1.20865 1.53925 1.22843 0.99718 0.82586 0.96415 1.21458 0.98311 0.94484 0.99528 1.19524 0.97245 0.92127 0.95984 1.21113 1.26634 0.94781 1.13226 0.90881 1.25026 0.94937 0.96704 0.96819 1.69915 1.38236 1.05835 1.40263 0.86775 0.80965 0.77851 0.83675 1.20257 1.21335 1.19077 0.76618 0.91169 0.90265 0.91525 0.91015 0.89888 0.91281 0.93803 0.93901 0.91976 0.91937 0.96566 0.96973 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.28 19.25 29.55 0.57 -1.71 16 2 C -0.17 -2.08 12.18 -37.12 -0.45 -2.54 16 3 C 0.01 0.13 3.15 -92.28 -0.29 -0.16 16 4 H 0.11 1.34 7.95 -51.93 -0.41 0.93 16 5 C -0.11 -1.05 6.35 -25.07 -0.16 -1.21 16 6 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 7 C -0.15 -1.63 6.56 -25.07 -0.16 -1.80 16 8 C 0.09 1.23 3.02 -25.61 -0.08 1.15 16 9 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 10 O -0.38 -6.27 9.90 -35.23 -0.35 -6.62 16 11 C 0.06 1.06 5.78 37.16 0.21 1.27 16 12 C -0.10 -2.09 5.52 -26.73 -0.15 -2.24 16 13 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 14 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 15 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 18 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.22 1.51 7.80 -54.09 -0.42 1.09 16 23 H 0.07 0.61 7.83 -51.92 -0.41 0.20 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.55 8.14 -51.94 -0.42 0.13 16 27 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -31.49 295.10 -6.79 -38.28 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.77 Total: -3.38 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -1.22 Total: -22.52 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.77 Total: -27.45 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.35 Total: -6.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.49 -6.79 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.361 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds