Wall clock time and date at job start Sun Mar 29 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35913 * 117.00012 * 2 1 4 4 C 1.39138 * 120.47511 * 359.97438 * 3 2 1 5 5 C 1.38533 * 118.37558 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.22088 * 0.28180 * 5 4 3 7 7 N 1.31850 * 120.88499 * 359.41879 * 6 5 4 8 8 C 1.31844 * 121.77838 * 0.59625 * 7 6 5 9 9 C 1.50702 * 119.65585 * 179.71657 * 8 7 6 10 10 N 1.46502 * 109.47499 * 269.97810 * 9 8 7 11 11 C 1.46499 * 119.99631 * 270.00171 * 10 9 8 12 12 C 1.36936 * 119.99704 * 89.99732 * 10 9 8 13 13 H 1.07999 * 119.99900 * 20.38101 * 12 10 9 14 14 C 1.38817 * 119.99665 * 200.36680 * 12 10 9 15 15 N 1.31612 * 120.00105 * 14.98383 * 14 12 10 16 16 Si 1.86802 * 119.99770 * 194.97819 * 14 12 10 17 17 H 1.48495 * 109.47195 * 85.00632 * 16 14 12 18 18 H 1.48501 * 109.46780 * 205.00688 * 16 14 12 19 19 H 1.48502 * 109.47079 * 325.00606 * 16 14 12 20 20 H 1.09003 * 109.47189 * 300.00724 * 1 2 3 21 21 H 1.09004 * 109.47104 * 60.00094 * 1 2 3 22 22 H 1.09003 * 109.47545 * 180.02562 * 1 2 3 23 23 H 1.08011 * 120.81132 * 359.96171 * 4 3 2 24 24 H 1.08003 * 120.38643 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.55791 * 179.72748 * 6 5 4 26 26 H 1.09000 * 109.46808 * 29.98041 * 9 8 7 27 27 H 1.09004 * 109.47145 * 149.97490 * 9 8 7 28 28 H 1.09006 * 109.46727 * 95.08955 * 11 10 9 29 29 H 1.09000 * 109.46533 * 215.08191 * 11 10 9 30 30 H 1.08999 * 109.47513 * 335.08372 * 11 10 9 31 31 H 0.96996 * 120.00006 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 -0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3542 3.5975 -0.0048 7 7 4.0334 2.4675 0.0015 8 6 3.4305 1.2950 0.0010 9 6 4.2542 0.0330 0.0020 10 7 4.5221 -0.3765 -1.3789 11 6 3.5935 -1.2746 -2.0698 12 6 5.6404 0.0804 -2.0238 13 1 6.4774 0.4553 -1.4533 14 6 5.6983 0.0615 -3.4106 15 7 4.5984 -0.1094 -4.1129 16 14 7.3374 0.2787 -4.2800 17 1 8.0249 -1.0340 -4.3754 18 1 7.1063 0.8169 -5.6446 19 1 8.1838 1.2261 -3.5110 20 1 -0.3634 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.2183 2.3519 -0.0016 24 1 1.4233 4.5251 0.0001 25 1 3.8850 4.5381 -0.0089 26 1 5.1977 0.2153 0.5164 27 1 3.7071 -0.7576 0.5157 28 1 2.8887 -0.6863 -2.6575 29 1 4.1528 -1.9373 -2.7302 30 1 3.0484 -1.8682 -1.3360 31 1 4.6389 -0.1223 -5.0819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206644291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:44 Heat of formation + Delta-G solvation = 27.650306 kcal Electronic energy + Delta-G solvation = -15372.186006 eV Core-core repulsion = 12848.324331 eV Total energy + Delta-G solvation = -2523.861675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08241 -37.58931 -35.45095 -32.15357 -31.05506 -29.91915 -27.19668 -26.21102 -25.63205 -22.35405 -22.29103 -20.43805 -17.64372 -16.77186 -16.31086 -15.68994 -15.50433 -14.63193 -13.96198 -13.68813 -13.54476 -13.27019 -12.79146 -12.60749 -12.11773 -11.58283 -11.11705 -11.07989 -10.89416 -10.79912 -10.55571 -10.22967 -9.90753 -9.81504 -9.16095 -8.88686 -8.45535 -7.76814 -6.72761 -5.65595 -3.05671 1.72006 1.84278 3.45593 3.50520 3.53058 3.62143 4.36315 4.61967 5.01985 5.13112 5.14681 5.29066 5.35111 5.51975 5.61376 5.63740 5.77242 5.82780 6.26017 6.34626 6.53754 6.64611 6.82724 6.92978 7.01267 7.46686 7.71187 7.82964 7.92762 8.45168 8.75338 9.30956 9.92784 10.41344 11.39263 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031216 B = 0.009722 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.767758 B = 2879.272802 C = 3326.340425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.078 3.922 4 C -0.173 4.173 5 C -0.161 4.161 6 C 0.058 3.942 7 N -0.437 5.437 8 C 0.113 3.887 9 C 0.196 3.804 10 N -0.582 5.582 11 C 0.167 3.833 12 C -0.240 4.240 13 H 0.075 0.925 14 C -0.003 4.003 15 N -0.908 5.908 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.279 1.279 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.097 0.903 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.004 0.996 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 2.756 8.499 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.212 6.212 3 C 0.030 3.970 4 C -0.199 4.199 5 C -0.182 4.182 6 C -0.098 4.098 7 N -0.147 5.147 8 C -0.031 4.031 9 C 0.068 3.932 10 N -0.303 5.303 11 C 0.023 3.977 12 C -0.370 4.370 13 H 0.092 0.908 14 C -0.200 4.200 15 N -0.553 5.553 16 Si 0.737 3.263 17 H -0.215 1.215 18 H -0.219 1.219 19 H -0.204 1.204 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.115 0.885 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.164 0.836 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.531 2.519 8.289 11.479 hybrid contribution -0.675 0.672 -0.890 1.303 sum -8.205 3.191 7.399 11.500 Atomic orbital electron populations 1.22983 0.79560 1.03552 1.00629 1.86163 1.20266 1.26199 1.88589 1.19990 0.93558 0.84542 0.98941 1.21510 0.99858 0.92600 1.05931 1.21725 0.95808 0.97557 1.03132 1.22571 0.91252 0.96739 0.99283 1.67660 1.39612 0.97434 1.09996 1.22555 0.88670 0.96250 0.95649 1.19904 0.96149 0.88511 0.88672 1.44261 1.24958 1.50736 1.10308 1.20793 0.92200 0.91671 0.93061 1.19345 0.91714 1.36882 0.89013 0.90768 1.25027 0.97020 1.01278 0.96721 1.70107 1.25285 1.54587 1.05288 0.86225 0.83519 0.77838 0.78758 1.21453 1.21926 1.20403 0.93370 0.93056 0.88481 0.85453 0.85749 0.83593 0.91933 0.92132 0.95655 0.93826 0.97728 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.83 101.05 0.99 1.35 16 2 O -0.30 -5.39 9.55 -19.47 -0.19 -5.58 16 3 C 0.08 1.52 6.67 -39.08 -0.26 1.26 16 4 C -0.17 -2.86 9.14 -39.14 -0.36 -3.21 16 5 C -0.16 -2.57 10.11 -39.47 -0.40 -2.97 16 6 C 0.06 1.05 11.18 -17.54 -0.20 0.86 16 7 N -0.44 -9.60 10.27 -9.35 -0.10 -9.69 16 8 C 0.11 2.49 6.38 -82.41 -0.53 1.96 16 9 C 0.20 4.45 5.78 -5.19 -0.03 4.42 16 10 N -0.58 -15.49 2.91 -182.49 -0.53 -16.03 16 11 C 0.17 4.33 9.02 59.85 0.54 4.87 16 12 C -0.24 -6.90 9.68 -15.06 -0.15 -7.05 16 13 H 0.07 2.12 7.86 -52.49 -0.41 1.70 16 14 C 0.00 -0.07 5.06 -17.43 -0.09 -0.16 16 15 N -0.91 -27.52 10.67 55.49 0.59 -26.93 16 16 Si 0.91 22.79 29.58 -169.99 -5.03 17.76 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H 0.05 0.50 7.70 -51.93 -0.40 0.10 16 21 H 0.05 0.62 7.70 -51.93 -0.40 0.22 16 22 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.13 1.68 6.45 -52.48 -0.34 1.34 16 24 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 25 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 27 H 0.06 1.25 7.24 -51.93 -0.38 0.88 16 28 H 0.03 0.71 7.40 -51.93 -0.38 0.33 16 29 H 0.04 1.19 7.21 -51.93 -0.37 0.82 16 30 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 31 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -33.21 267.13 -5.61 -38.81 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -3.91 Total: -3.71 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.47 Total: 1.33 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.04 Total: -52.65 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.19 Total: -5.58 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.21 -5.61 -38.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206644291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.461 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds