Wall clock time and date at job start Sun Mar 29 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35913 * 117.00012 * 2 1 4 4 C 1.39138 * 120.47511 * 359.97438 * 3 2 1 5 5 C 1.38533 * 118.37558 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.22088 * 0.28180 * 5 4 3 7 7 N 1.31850 * 120.88499 * 359.41879 * 6 5 4 8 8 C 1.31844 * 121.77838 * 0.59625 * 7 6 5 9 9 C 1.50702 * 119.65585 * 179.71657 * 8 7 6 10 10 N 1.46502 * 109.47499 * 269.97810 * 9 8 7 11 11 C 1.46499 * 119.99631 * 270.00171 * 10 9 8 12 12 C 1.36936 * 119.99704 * 89.99732 * 10 9 8 13 13 H 1.07999 * 119.99900 * 20.38101 * 12 10 9 14 14 C 1.38817 * 119.99665 * 200.36680 * 12 10 9 15 15 N 1.31612 * 120.00105 * 14.98383 * 14 12 10 16 16 Si 1.86802 * 119.99770 * 194.97819 * 14 12 10 17 17 H 1.48495 * 109.47195 * 85.00632 * 16 14 12 18 18 H 1.48501 * 109.46780 * 205.00688 * 16 14 12 19 19 H 1.48502 * 109.47079 * 325.00606 * 16 14 12 20 20 H 1.09003 * 109.47189 * 300.00724 * 1 2 3 21 21 H 1.09004 * 109.47104 * 60.00094 * 1 2 3 22 22 H 1.09003 * 109.47545 * 180.02562 * 1 2 3 23 23 H 1.08011 * 120.81132 * 359.96171 * 4 3 2 24 24 H 1.08003 * 120.38643 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.55791 * 179.72748 * 6 5 4 26 26 H 1.09000 * 109.46808 * 29.98041 * 9 8 7 27 27 H 1.09004 * 109.47145 * 149.97490 * 9 8 7 28 28 H 1.09006 * 109.46727 * 95.08955 * 11 10 9 29 29 H 1.09000 * 109.46533 * 215.08191 * 11 10 9 30 30 H 1.08999 * 109.47513 * 335.08372 * 11 10 9 31 31 H 0.96996 * 120.00006 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 -0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3542 3.5975 -0.0048 7 7 4.0334 2.4675 0.0015 8 6 3.4305 1.2950 0.0010 9 6 4.2542 0.0330 0.0020 10 7 4.5221 -0.3765 -1.3789 11 6 3.5935 -1.2746 -2.0698 12 6 5.6404 0.0804 -2.0238 13 1 6.4774 0.4553 -1.4533 14 6 5.6983 0.0615 -3.4106 15 7 4.5984 -0.1094 -4.1129 16 14 7.3374 0.2787 -4.2800 17 1 8.0249 -1.0340 -4.3754 18 1 7.1063 0.8169 -5.6446 19 1 8.1838 1.2261 -3.5110 20 1 -0.3634 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.2183 2.3519 -0.0016 24 1 1.4233 4.5251 0.0001 25 1 3.8850 4.5381 -0.0089 26 1 5.1977 0.2153 0.5164 27 1 3.7071 -0.7576 0.5157 28 1 2.8887 -0.6863 -2.6575 29 1 4.1528 -1.9373 -2.7302 30 1 3.0484 -1.8682 -1.3360 31 1 4.6389 -0.1223 -5.0819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206644291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:43 Heat of formation + Delta-G solvation = 4.872917 kcal Electronic energy + Delta-G solvation = -15373.173708 eV Core-core repulsion = 12848.324331 eV Total energy + Delta-G solvation = -2524.849377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47390 -38.92128 -37.41238 -33.91584 -32.69224 -31.53803 -28.37992 -27.96230 -27.65739 -24.09351 -23.66003 -22.21584 -18.98961 -18.69025 -17.84395 -17.22668 -16.84154 -16.47463 -15.50411 -15.27520 -15.10984 -14.96424 -14.32810 -14.16773 -13.75104 -13.11734 -12.96414 -12.79459 -12.53472 -12.29313 -12.21297 -12.14256 -11.97132 -11.87501 -10.66308 -10.55503 -10.31787 -9.19948 -8.81101 -7.82338 -5.26848 0.31904 0.46703 1.45001 1.47206 1.55485 2.41552 2.51695 2.93943 3.31323 3.69127 3.82206 3.87996 3.93834 4.22628 4.40717 4.42341 4.52108 4.71546 4.73193 4.82296 4.90729 5.00272 5.17997 5.26452 5.34428 5.63996 5.66959 5.71808 6.31427 6.43341 7.14688 7.30091 7.85538 8.29525 9.21439 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031216 B = 0.009722 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.767758 B = 2879.272802 C = 3326.340425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.071 3.929 4 C -0.171 4.171 5 C -0.140 4.140 6 C 0.037 3.963 7 N -0.474 5.474 8 C 0.072 3.928 9 C 0.199 3.801 10 N -0.601 5.601 11 C 0.191 3.809 12 C -0.248 4.248 13 H 0.068 0.932 14 C -0.057 4.057 15 N -0.940 5.940 16 Si 0.969 3.031 17 H -0.281 1.281 18 H -0.295 1.295 19 H -0.272 1.272 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.118 0.882 23 H 0.167 0.833 24 H 0.172 0.828 25 H 0.173 0.827 26 H 0.055 0.945 27 H 0.075 0.925 28 H -0.005 1.005 29 H 0.017 0.983 30 H 0.032 0.968 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 4.030 9.344 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.022 3.978 4 C -0.197 4.197 5 C -0.160 4.160 6 C -0.120 4.120 7 N -0.185 5.185 8 C -0.070 4.070 9 C 0.072 3.928 10 N -0.322 5.322 11 C 0.046 3.954 12 C -0.378 4.378 13 H 0.086 0.914 14 C -0.251 4.251 15 N -0.588 5.588 16 Si 0.798 3.202 17 H -0.207 1.207 18 H -0.222 1.222 19 H -0.197 1.197 20 H 0.092 0.908 21 H 0.073 0.927 22 H 0.136 0.864 23 H 0.184 0.816 24 H 0.189 0.811 25 H 0.190 0.810 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.013 0.987 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.022 3.798 9.185 13.423 hybrid contribution -0.373 0.363 -0.968 1.099 sum -9.395 4.161 8.217 13.157 Atomic orbital electron populations 1.23345 0.76713 1.05570 1.01975 1.86116 1.23223 1.25883 1.88413 1.20032 0.93066 0.86176 0.98502 1.22002 1.01782 0.91639 1.04278 1.22261 0.95079 0.99313 0.99358 1.23141 0.92879 0.96534 0.99417 1.67520 1.41502 0.98540 1.10931 1.22149 0.90067 0.95755 0.99019 1.19823 0.96380 0.90007 0.86559 1.44310 1.24982 1.51789 1.11156 1.20439 0.91176 0.90882 0.92927 1.19519 0.92656 1.36238 0.89418 0.91412 1.25755 1.00166 1.01871 0.97326 1.70271 1.27000 1.56518 1.04969 0.85241 0.79801 0.77937 0.77260 1.20740 1.22188 1.19725 0.90804 0.92678 0.86397 0.81594 0.81064 0.81004 0.92714 0.90680 0.98663 0.96388 0.94939 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.83 113.37 1.11 1.52 16 2 O -0.32 -11.10 9.55 -92.58 -0.88 -11.99 16 3 C 0.07 2.65 6.67 22.60 0.15 2.80 16 4 C -0.17 -5.04 9.14 22.56 0.21 -4.84 16 5 C -0.14 -3.90 10.11 22.34 0.23 -3.68 16 6 C 0.04 1.27 11.18 84.69 0.95 2.22 16 7 N -0.47 -20.76 10.27 -183.50 -1.88 -22.64 16 8 C 0.07 3.18 6.38 42.67 0.27 3.45 16 9 C 0.20 9.22 5.78 85.63 0.49 9.72 16 10 N -0.60 -32.68 2.91 -731.29 -2.13 -34.81 16 11 C 0.19 10.10 9.02 127.77 1.15 11.25 16 12 C -0.25 -14.63 9.68 84.03 0.81 -13.81 16 13 H 0.07 3.98 7.86 -2.91 -0.02 3.95 16 14 C -0.06 -3.38 5.06 84.86 0.43 -2.95 16 15 N -0.94 -58.54 10.67 21.65 0.23 -58.31 16 16 Si 0.97 47.74 29.58 68.60 2.03 49.77 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 20 H 0.07 1.23 7.70 -2.39 -0.02 1.21 16 21 H 0.05 1.16 7.70 -2.39 -0.02 1.15 16 22 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.17 3.52 6.45 -2.90 -0.02 3.50 16 24 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 25 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 26 H 0.05 2.53 8.03 -2.39 -0.02 2.51 16 27 H 0.08 3.14 7.24 -2.38 -0.02 3.12 16 28 H 0.00 -0.29 7.40 -2.38 -0.02 -0.31 16 29 H 0.02 1.00 7.21 -2.39 -0.02 0.98 16 30 H 0.03 1.48 7.84 -2.39 -0.02 1.47 16 31 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -73.83 267.13 4.29 -69.54 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.12 Total: 2.74 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.81 Total: 5.69 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -3.78 Total: -115.76 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.88 Total: -11.99 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -73.83 4.29 -69.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206644291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.418 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds