Wall clock time and date at job start Sun Mar 29 2020 21:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34854 * 125.96037 * 2 1 4 4 N 1.36313 * 106.68613 * 180.02562 * 3 2 1 5 5 C 1.35422 * 107.40113 * 359.95594 * 4 3 2 6 6 N 1.30089 * 108.62540 * 0.05716 * 5 4 3 7 7 C 1.51045 * 123.98271 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.71248 * 256.26734 * 7 5 4 9 9 O 1.42900 * 109.71480 * 135.62215 * 7 5 4 10 10 C 1.34931 * 116.99820 * 91.24524 * 9 7 5 11 11 H 1.08006 * 119.99692 * 359.97438 * 10 9 7 12 12 C 1.38629 * 119.99974 * 180.02562 * 10 9 7 13 13 N 1.31581 * 120.00178 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00047 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47200 * 89.99853 * 14 12 10 16 16 H 1.48500 * 109.47200 * 210.00174 * 14 12 10 17 17 H 1.48503 * 109.47297 * 329.99982 * 14 12 10 18 18 C 1.53401 * 108.21029 * 15.94524 * 7 5 4 19 19 C 1.53148 * 109.24199 * 311.18554 * 18 7 5 20 20 C 1.46467 * 127.77746 * 179.89782 * 4 3 2 21 21 H 1.09005 * 109.47022 * 90.00137 * 1 2 3 22 22 H 1.09005 * 109.47134 * 209.99752 * 1 2 3 23 23 H 1.09000 * 109.47321 * 329.99752 * 1 2 3 24 24 H 1.07995 * 126.65454 * 0.02701 * 3 2 1 25 25 H 0.97001 * 120.00000 * 179.97438 * 13 12 10 26 26 H 1.08995 * 109.50627 * 191.25430 * 18 7 5 27 27 H 1.09000 * 109.51007 * 71.11464 * 18 7 5 28 28 H 1.09002 * 109.46633 * 189.49121 * 19 18 7 29 29 H 1.08998 * 109.46901 * 309.48050 * 19 18 7 30 30 H 1.08996 * 109.59148 * 77.40475 * 20 4 3 31 31 H 1.09005 * 109.57821 * 316.99458 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5414 -0.7119 0.0001 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0003 8 1 4.9207 -2.0099 -0.9963 9 8 4.5933 -2.6579 0.9417 10 6 4.0505 -3.8038 0.4803 11 1 3.7677 -3.8874 -0.5587 12 6 3.8547 -4.8734 1.3402 13 7 4.1987 -4.7714 2.6062 14 14 3.1039 -6.4601 0.7014 15 1 4.1833 -7.3617 0.2246 16 1 2.3494 -7.1256 1.7936 17 1 2.1821 -6.1545 -0.4221 18 6 5.9749 -0.7417 0.4000 19 6 5.9822 0.5431 -0.4335 20 6 4.8147 1.4382 -0.0029 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9762 2.1222 0.0004 25 1 4.0614 -5.5197 3.2079 26 1 6.8925 -1.3004 0.2158 27 1 5.9081 -0.4887 1.4581 28 1 6.9223 1.0722 -0.2771 29 1 5.8780 0.2920 -1.4890 30 1 5.0006 1.8263 0.9985 31 1 4.7121 2.2661 -0.7045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:03 Heat of formation + Delta-G solvation = 23.035906 kcal Electronic energy + Delta-G solvation = -15310.996638 eV Core-core repulsion = 12786.934867 eV Total energy + Delta-G solvation = -2524.061770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68958 -36.94382 -35.48117 -32.21912 -31.30696 -30.67155 -27.91063 -26.41299 -24.44122 -22.69708 -21.84188 -19.66452 -18.63522 -17.55999 -16.46441 -15.67958 -14.94951 -14.22993 -14.04370 -13.95456 -13.70559 -13.34153 -12.85022 -12.27955 -12.20290 -12.02657 -11.61349 -11.29685 -11.13804 -11.01029 -10.76642 -10.46017 -10.03466 -9.82571 -9.28298 -9.05771 -8.87750 -7.94731 -7.58330 -5.83253 -3.45387 2.57570 3.25311 3.40810 3.44651 3.49689 3.78905 4.41159 4.67317 4.81757 4.95391 5.06375 5.25848 5.38456 5.52858 5.55502 5.69486 5.75747 5.76624 5.97104 5.99611 6.07157 6.21320 6.34458 6.41942 6.60998 6.64701 6.94099 7.40198 7.63721 7.78024 8.54781 8.91725 9.60342 10.16862 11.37504 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.009972 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.892583 B = 2807.174378 C = 3589.742070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.013 4.013 3 C -0.077 4.077 4 N -0.463 5.463 5 C 0.210 3.790 6 N -0.458 5.458 7 C 0.178 3.822 8 H 0.065 0.935 9 O -0.264 6.264 10 C -0.341 4.341 11 H 0.066 0.934 12 C 0.023 3.977 13 N -0.893 5.893 14 Si 0.925 3.075 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.120 4.120 19 C -0.130 4.130 20 C 0.107 3.893 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.164 0.836 25 H 0.256 0.744 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 13.181 -6.428 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 C -0.209 4.209 4 N -0.148 5.148 5 C -0.054 4.054 6 N -0.176 5.176 7 C 0.115 3.885 8 H 0.083 0.917 9 O -0.176 6.176 10 C -0.420 4.420 11 H 0.084 0.916 12 C -0.174 4.174 13 N -0.537 5.537 14 Si 0.752 3.248 15 H -0.209 1.209 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.158 4.158 19 C -0.168 4.168 20 C -0.016 4.016 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.182 0.818 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.699 12.365 -6.074 13.794 hybrid contribution -0.345 0.262 -0.403 0.592 sum 0.354 12.628 -6.476 14.196 Atomic orbital electron populations 1.19933 0.88454 1.02111 1.01381 1.20878 0.96353 0.88896 1.08115 1.22066 0.83525 0.99655 1.15703 1.45517 1.05905 1.07676 1.55726 1.25036 0.96524 0.80924 1.02881 1.70135 0.99948 1.29019 1.18522 1.20298 0.85735 0.87434 0.94990 0.91705 1.85760 1.79441 1.20195 1.32175 1.20836 1.38148 0.88476 0.94590 0.91629 1.24894 0.99022 0.98277 0.95229 1.70024 1.49285 1.31092 1.03263 0.85958 0.78849 0.81946 0.78023 1.20926 1.21047 1.19875 1.21704 0.98726 0.94594 1.00807 1.21869 0.97277 0.96498 1.01110 1.21875 0.83128 0.94116 1.02457 0.92124 0.91297 0.92102 0.81834 0.93406 0.89896 0.90646 0.89413 0.90870 0.90271 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.42 36.01 0.38 -0.58 16 2 C -0.01 -0.25 7.10 -82.72 -0.59 -0.84 16 3 C -0.08 -1.32 11.55 -16.76 -0.19 -1.51 16 4 N -0.46 -8.26 3.13 -113.75 -0.36 -8.62 16 5 C 0.21 4.73 7.27 -155.24 -1.13 3.60 16 6 N -0.46 -11.29 11.24 -6.88 -0.08 -11.37 16 7 C 0.18 4.03 3.04 -27.51 -0.08 3.94 16 8 H 0.07 1.43 7.80 -51.93 -0.41 1.03 16 9 O -0.26 -7.71 9.44 -16.51 -0.16 -7.87 16 10 C -0.34 -10.35 9.79 30.88 0.30 -10.05 16 11 H 0.07 1.93 7.64 -52.48 -0.40 1.52 16 12 C 0.02 0.71 5.49 -17.51 -0.10 0.61 16 13 N -0.89 -28.89 13.67 55.48 0.76 -28.13 16 14 Si 0.92 23.24 29.55 -169.99 -5.02 18.22 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 18 C -0.12 -2.05 5.62 -26.45 -0.15 -2.20 16 19 C -0.13 -1.59 5.94 -26.51 -0.16 -1.75 16 20 C 0.11 1.35 6.98 -3.91 -0.03 1.32 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -37.24 266.62 -6.75 -43.99 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.17 Total: -2.78 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.75 Total: -7.45 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.32 Total: -48.12 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.16 Total: -7.87 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -37.24 -6.75 -43.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.021 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds