Wall clock time and date at job start Sun Mar 29 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35786 * 116.99741 * 2 1 4 4 N 1.32128 * 119.72379 * 359.97438 * 3 2 1 5 5 C 1.32015 * 121.71518 * 180.02562 * 4 3 2 6 6 C 1.38052 * 120.98082 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.32671 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46925 * 90.00453 * 7 6 5 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99931 * 13 11 9 17 17 C 1.38756 * 119.34532 * 0.27742 * 6 5 4 18 18 C 1.38955 * 118.42076 * 359.48608 * 17 6 5 19 19 N 1.39969 * 120.50555 * 180.22261 * 18 17 6 20 20 H 1.08998 * 109.47135 * 60.00125 * 1 2 3 21 21 H 1.08998 * 109.46658 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47097 * 300.00215 * 1 2 3 23 23 H 1.08010 * 119.50752 * 179.97438 * 5 4 3 24 24 H 1.09000 * 109.47318 * 209.99687 * 7 6 5 25 25 H 1.09000 * 109.47161 * 330.00318 * 7 6 5 26 26 H 1.09004 * 109.46930 * 299.99901 * 8 7 6 27 27 H 1.09004 * 109.47059 * 59.99503 * 8 7 6 28 28 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 29 29 H 1.08006 * 120.78707 * 179.70421 * 17 6 5 30 30 H 0.97004 * 119.99861 * 180.27801 * 19 18 17 31 31 H 0.96997 * 120.00573 * 0.27220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 7 1.3205 2.3145 -0.0005 5 6 1.8785 3.5109 -0.0010 6 6 3.2515 3.6546 -0.0005 7 6 3.8729 5.0276 -0.0006 8 6 4.0828 5.4924 1.4420 9 6 4.7036 6.8655 1.4420 10 1 4.9258 7.3577 0.5067 11 6 4.9869 7.4940 2.6361 12 7 4.7158 6.8949 3.7750 13 14 5.7557 9.1965 2.6361 14 1 4.6835 10.2238 2.6355 15 1 6.5970 9.3596 3.8489 16 1 6.5980 9.3592 1.4240 17 6 4.0537 2.5224 -0.0053 18 6 3.4390 1.2763 0.0005 19 7 4.2062 0.1056 0.0007 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2515 4.3904 -0.0019 24 1 4.8338 4.9915 -0.5140 25 1 3.2121 5.7255 -0.5147 26 1 3.1219 5.5284 1.9555 27 1 4.7435 4.7944 1.9561 28 1 4.9154 7.3368 4.6151 29 1 5.1304 2.6078 -0.0098 30 1 3.7693 -0.7606 0.0007 31 1 5.1746 0.1602 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:06 Heat of formation + Delta-G solvation = -41.959520 kcal Electronic energy + Delta-G solvation = -14485.466874 eV Core-core repulsion = 11958.586691 eV Total energy + Delta-G solvation = -2526.880183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58073 -38.90249 -36.24500 -35.77558 -34.06751 -31.09467 -29.84708 -28.22851 -26.68022 -24.10294 -23.81466 -21.80047 -19.25235 -18.72269 -18.51930 -17.21664 -16.92092 -16.48566 -16.36489 -15.38841 -15.19340 -14.70776 -14.44361 -14.23493 -13.99373 -13.53504 -13.01833 -12.80794 -12.66785 -12.39312 -12.24077 -12.06149 -11.76674 -11.53748 -11.23490 -10.60177 -10.50468 -9.86705 -8.31826 -8.15692 -6.27978 0.36268 0.44160 1.43688 1.44811 1.55886 2.19638 2.44157 2.87018 2.91632 3.17144 3.59522 3.89744 4.23903 4.31267 4.37177 4.48535 4.54165 4.79096 4.80073 4.91009 4.92396 5.16279 5.40700 5.53258 5.58584 5.80820 5.88219 6.14798 6.26269 6.53685 6.89535 6.95913 7.01532 7.41621 8.95323 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.051713 B = 0.005429 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.317468 B = 5155.883340 C = 5326.769919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.321 6.321 3 C 0.219 3.781 4 N -0.510 5.510 5 C 0.056 3.944 6 C -0.103 4.103 7 C -0.056 4.056 8 C 0.036 3.964 9 C -0.540 4.540 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.965 3.035 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.260 1.260 17 C -0.142 4.142 18 C 0.163 3.837 19 N -0.854 5.854 20 H 0.052 0.948 21 H 0.125 0.875 22 H 0.046 0.954 23 H 0.160 0.840 24 H 0.070 0.930 25 H 0.071 0.929 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.410 0.590 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -13.018 -8.843 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.230 6.230 3 C 0.034 3.966 4 N -0.232 5.232 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.094 4.094 8 C -0.001 4.001 9 C -0.578 4.578 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.790 3.210 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.184 1.184 17 C -0.172 4.172 18 C 0.055 3.945 19 N -0.397 5.397 20 H 0.071 0.929 21 H 0.143 0.857 22 H 0.064 0.936 23 H 0.177 0.823 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.168 0.832 30 H 0.240 0.760 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.350 -13.318 -8.671 16.477 hybrid contribution 1.072 0.817 0.543 1.453 sum -3.278 -12.501 -8.128 15.268 Atomic orbital electron populations 1.22941 0.76381 1.04277 1.01682 1.86068 1.23784 1.23607 1.89493 1.19462 0.88175 0.85648 1.03307 1.67102 1.40549 0.98775 1.16816 1.22114 0.92682 0.93411 1.01759 1.20829 0.94520 0.96680 0.98593 1.20453 0.99986 0.90779 0.98179 1.18929 0.94775 0.94722 0.91697 1.21723 1.40567 1.02684 0.92847 0.91580 1.25985 0.96335 1.02305 0.95216 1.70118 1.49484 1.39996 0.98023 0.85443 0.78500 0.79203 0.77875 1.19876 1.21053 1.18432 1.20988 1.01059 0.89367 1.05817 1.17792 0.88097 0.89303 0.99294 1.42143 1.08602 1.04378 1.84590 0.92945 0.85701 0.93551 0.82287 0.91112 0.91041 0.99285 0.99184 0.92892 0.83184 0.76033 0.75933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.39 113.37 1.18 2.08 16 2 O -0.32 -8.83 9.75 -91.15 -0.89 -9.72 16 3 C 0.22 7.12 7.51 84.96 0.64 7.76 16 4 N -0.51 -17.95 9.22 -308.43 -2.84 -20.79 16 5 C 0.06 2.04 10.84 84.62 0.92 2.96 16 6 C -0.10 -3.82 5.15 -19.78 -0.10 -3.93 16 7 C -0.06 -2.27 5.30 29.85 0.16 -2.11 16 8 C 0.04 1.89 4.95 29.85 0.15 2.04 16 9 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 10 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 13 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 17 C -0.14 -4.66 9.72 22.57 0.22 -4.44 16 18 C 0.16 4.92 6.80 38.32 0.26 5.18 16 19 N -0.85 -18.48 9.10 -50.79 -0.46 -18.94 16 20 H 0.05 1.15 8.11 -2.39 -0.02 1.13 16 21 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 23 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 24 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 25 H 0.07 2.74 8.09 -2.39 -0.02 2.73 16 26 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 27 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 30 H 0.41 7.68 8.22 -92.71 -0.76 6.92 16 31 H 0.41 6.98 8.86 -92.71 -0.82 6.16 16 Total: -1.00 -67.76 273.51 1.79 -65.97 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -0.44 Total: 14.77 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.11 Total: -20.16 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.02 Total: -96.83 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.89 Total: -9.72 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.76 1.79 -65.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.007 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds