Wall clock time and date at job start Sun Mar 29 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38212 * 119.99037 * 2 1 4 4 C 1.38441 * 119.97570 * 180.29044 * 3 2 1 5 5 F 1.35099 * 120.02700 * 179.70702 * 4 3 2 6 6 C 1.38480 * 119.94667 * 359.72809 * 4 3 2 7 7 C 1.38178 * 119.97471 * 359.97438 * 6 4 3 8 8 C 1.38224 * 119.98346 * 179.74299 * 2 1 3 9 9 C 1.50703 * 119.97665 * 359.97438 * 8 2 1 10 10 C 1.53000 * 109.46912 * 84.72679 * 9 8 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 H 1.09000 * 109.47850 * 270.25620 * 1 2 3 21 21 H 1.09000 * 109.47182 * 30.25678 * 1 2 3 22 22 H 1.08999 * 109.47290 * 150.25002 * 1 2 3 23 23 H 1.08006 * 120.01589 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.01226 * 179.97438 * 6 4 3 25 25 H 1.07994 * 119.98786 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47152 * 324.72451 * 9 8 2 27 27 H 1.09001 * 109.46980 * 204.72552 * 9 8 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1967 -0.0061 5 9 4.2585 2.3662 -0.0121 6 6 4.2732 -0.0034 -0.0065 7 6 3.5804 -1.1989 -0.0002 8 6 2.1977 -1.1972 0.0054 9 6 1.4433 -2.5018 0.0118 10 6 1.0727 -2.8837 -1.4227 11 6 0.3062 -4.2078 -1.4161 12 6 -0.0594 -4.5837 -2.8289 13 1 0.2260 -3.9420 -3.6495 14 6 -0.7582 -5.7467 -3.0741 15 7 -1.1053 -6.5283 -2.0749 16 14 -1.2108 -6.2129 -4.8254 17 1 0.0262 -6.3604 -5.6338 18 1 -1.9548 -7.4980 -4.8190 19 1 -2.0641 -5.1504 -5.4157 20 1 -0.3635 0.0046 1.0276 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3634 -0.8922 -0.5099 23 1 1.6579 2.1325 0.0004 24 1 5.3532 -0.0049 -0.0116 25 1 4.1190 -2.1349 -0.0010 26 1 0.5354 -2.3936 0.6051 27 1 2.0697 -3.2816 0.4451 28 1 0.4463 -2.1039 -1.8560 29 1 1.9806 -2.9919 -2.0160 30 1 0.9322 -4.9878 -0.9827 31 1 -0.6017 -4.0992 -0.8228 32 1 -1.5966 -7.3466 -2.2474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250063135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:27 Heat of formation + Delta-G solvation = -54.800165 kcal Electronic energy + Delta-G solvation = -14294.208157 eV Core-core repulsion = 11746.851200 eV Total energy + Delta-G solvation = -2547.356957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.82784 -39.40982 -34.75962 -32.83403 -32.31065 -30.14098 -27.38015 -26.31128 -23.56614 -22.16168 -20.86953 -20.01375 -17.14695 -16.50975 -16.32464 -15.55200 -15.25203 -14.47072 -14.25688 -13.83333 -13.58121 -13.17069 -13.01856 -12.44027 -12.29464 -11.94556 -11.51060 -11.39505 -11.28976 -10.92292 -10.67743 -10.65703 -10.46835 -9.67654 -9.35690 -9.12475 -8.83810 -8.34501 -8.23090 -5.99907 -4.02242 1.26298 1.30181 3.33365 3.37782 3.40412 3.65469 4.31339 4.46186 4.76566 4.88798 5.05827 5.25885 5.34108 5.36151 5.61471 5.73688 5.78512 5.89661 6.02786 6.08231 6.17373 6.24375 6.37880 6.42364 6.59133 6.86962 6.89304 7.00171 7.14242 7.67561 7.81644 8.00302 8.43089 9.04782 9.61910 11.11298 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.048697 B = 0.005031 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.843255 B = 5563.641094 C = 5606.366834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.055 4.055 3 C -0.155 4.155 4 C 0.083 3.917 5 F -0.147 7.147 6 C -0.159 4.159 7 C -0.089 4.089 8 C -0.075 4.075 9 C -0.086 4.086 10 C -0.104 4.104 11 C 0.021 3.979 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 12.812 5.566 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.174 4.174 4 C 0.064 3.936 5 F -0.126 7.126 6 C -0.178 4.178 7 C -0.107 4.107 8 C -0.076 4.076 9 C -0.123 4.123 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.091 0.909 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.599 12.688 5.604 15.361 hybrid contribution -0.042 -0.068 -0.981 0.985 sum 6.557 12.621 4.623 14.955 Atomic orbital electron populations 1.20950 0.90438 1.03977 1.02644 1.19662 0.96557 0.91555 0.97738 1.20961 0.92138 0.99143 1.05128 1.17638 0.90158 0.81122 1.04730 1.91461 1.80395 1.46497 1.94237 1.21067 1.00496 0.91355 1.04839 1.20965 0.93708 0.97498 0.98500 1.20168 0.93648 0.95740 0.98011 1.20820 0.99263 0.92016 1.00199 1.21652 1.00048 1.00126 0.92335 1.19116 0.94920 0.90621 0.96957 1.21229 1.35318 1.06326 0.93074 0.92803 1.25015 0.95968 0.96482 0.96920 1.69955 1.39551 1.13316 1.30726 0.86676 0.78603 0.77695 0.85140 1.20259 1.21287 1.20255 0.90939 0.91599 0.89548 0.85190 0.85198 0.84982 0.90981 0.91249 0.93121 0.93272 0.96587 0.96572 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.21 36.00 0.33 -1.20 16 2 C -0.05 -0.76 5.88 -104.64 -0.62 -1.37 16 3 C -0.15 -2.02 9.68 -39.52 -0.38 -2.41 16 4 C 0.08 1.11 7.30 -39.42 -0.29 0.83 16 5 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 6 C -0.16 -2.03 10.03 -39.51 -0.40 -2.43 16 7 C -0.09 -1.20 9.68 -39.59 -0.38 -1.58 16 8 C -0.08 -1.11 5.13 -104.62 -0.54 -1.65 16 9 C -0.09 -1.40 4.65 -27.88 -0.13 -1.53 16 10 C -0.10 -2.08 4.94 -26.73 -0.13 -2.21 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 22 H 0.09 1.21 5.40 -51.93 -0.28 0.93 16 23 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 24 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 25 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 26 H 0.07 1.14 7.00 -51.93 -0.36 0.77 16 27 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 28 H 0.05 1.00 6.88 -51.93 -0.36 0.64 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -29.73 275.66 -7.51 -37.24 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.34 Total: -3.39 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -3.08 Total: -26.59 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.73 -7.51 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.559 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds