Wall clock time and date at job start Sun Mar 29 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38212 * 119.99037 * 2 1 4 4 C 1.38441 * 119.97570 * 180.29044 * 3 2 1 5 5 F 1.35099 * 120.02700 * 179.70702 * 4 3 2 6 6 C 1.38480 * 119.94667 * 359.72809 * 4 3 2 7 7 C 1.38178 * 119.97471 * 359.97438 * 6 4 3 8 8 C 1.38224 * 119.98346 * 179.74299 * 2 1 3 9 9 C 1.50703 * 119.97665 * 359.97438 * 8 2 1 10 10 C 1.53000 * 109.46912 * 84.72679 * 9 8 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47116 * 59.99479 * 16 14 12 18 18 H 1.48490 * 109.47381 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46756 * 300.00079 * 16 14 12 20 20 H 1.09000 * 109.47850 * 270.25620 * 1 2 3 21 21 H 1.09000 * 109.47182 * 30.25678 * 1 2 3 22 22 H 1.08999 * 109.47290 * 150.25002 * 1 2 3 23 23 H 1.08006 * 120.01589 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.01226 * 179.97438 * 6 4 3 25 25 H 1.07994 * 119.98786 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47152 * 324.72451 * 9 8 2 27 27 H 1.09001 * 109.46980 * 204.72552 * 9 8 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1967 -0.0061 5 9 4.2585 2.3662 -0.0121 6 6 4.2732 -0.0034 -0.0065 7 6 3.5804 -1.1989 -0.0002 8 6 2.1977 -1.1972 0.0054 9 6 1.4433 -2.5018 0.0118 10 6 1.0727 -2.8837 -1.4227 11 6 0.3062 -4.2078 -1.4161 12 6 -0.0594 -4.5837 -2.8289 13 1 0.2260 -3.9420 -3.6495 14 6 -0.7582 -5.7467 -3.0741 15 7 -1.1053 -6.5283 -2.0749 16 14 -1.2108 -6.2129 -4.8254 17 1 0.0262 -6.3604 -5.6338 18 1 -1.9548 -7.4980 -4.8190 19 1 -2.0641 -5.1504 -5.4157 20 1 -0.3635 0.0046 1.0276 21 1 -0.3633 0.8877 -0.5178 22 1 -0.3634 -0.8922 -0.5099 23 1 1.6579 2.1325 0.0004 24 1 5.3532 -0.0049 -0.0116 25 1 4.1190 -2.1349 -0.0010 26 1 0.5354 -2.3936 0.6051 27 1 2.0697 -3.2816 0.4451 28 1 0.4463 -2.1039 -1.8560 29 1 1.9806 -2.9919 -2.0160 30 1 0.9322 -4.9878 -0.9827 31 1 -0.6017 -4.0992 -0.8228 32 1 -1.5966 -7.3466 -2.2474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250063135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:27 Heat of formation + Delta-G solvation = -69.281382 kcal Electronic energy + Delta-G solvation = -14294.836110 eV Core-core repulsion = 11746.851200 eV Total energy + Delta-G solvation = -2547.984910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86859 -40.48341 -36.41162 -34.53450 -33.52722 -31.68140 -28.68235 -27.71792 -25.26458 -23.27106 -22.31932 -21.46229 -18.46419 -18.15389 -17.58835 -16.65571 -16.55977 -16.26318 -15.69183 -14.90529 -14.69729 -14.40561 -14.31339 -14.06623 -13.80763 -13.13064 -13.04797 -12.85777 -12.72303 -12.54831 -12.30772 -12.13977 -11.88866 -11.39042 -11.27711 -11.10647 -10.52335 -9.84738 -9.36404 -8.17930 -6.28692 0.19248 0.29023 1.41118 1.43514 1.51566 2.42283 2.60611 3.15130 3.28963 3.76861 3.84241 4.00029 4.18626 4.26380 4.50646 4.57233 4.65846 4.73046 4.82247 4.91561 5.00313 5.13878 5.17012 5.20139 5.25955 5.36158 5.42317 5.57343 5.67699 5.82750 5.88859 6.00126 6.28669 6.88303 7.40421 8.93316 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.048697 B = 0.005031 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.843255 B = 5563.641094 C = 5606.366834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 C -0.156 4.156 4 C 0.075 3.925 5 F -0.148 7.148 6 C -0.158 4.158 7 C -0.092 4.092 8 C -0.093 4.093 9 C -0.075 4.075 10 C -0.089 4.089 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.057 0.943 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.046 0.954 30 H -0.007 1.007 31 H -0.005 1.005 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 13.923 4.935 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.061 4.061 3 C -0.175 4.175 4 C 0.056 3.944 5 F -0.127 7.127 6 C -0.177 4.177 7 C -0.110 4.110 8 C -0.093 4.093 9 C -0.112 4.112 10 C -0.127 4.127 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.084 0.916 23 H 0.168 0.832 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.013 0.987 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.078 13.814 4.975 16.299 hybrid contribution -0.166 -0.382 -0.747 0.855 sum 6.912 13.432 4.228 15.687 Atomic orbital electron populations 1.20957 0.89698 1.03754 1.03507 1.19823 0.97238 0.91524 0.97521 1.21155 0.92191 0.99659 1.04465 1.17839 0.90522 0.81335 1.04703 1.91461 1.80418 1.46554 1.94238 1.21293 1.01687 0.90754 1.03933 1.21142 0.93337 0.98463 0.98049 1.20067 0.94231 0.95064 0.99977 1.20601 0.99731 0.93290 0.97557 1.21407 0.99017 0.97199 0.95035 1.19029 0.94228 0.92759 0.95304 1.21689 1.35458 1.06707 0.94386 0.92518 1.25931 0.95807 0.96425 1.01443 1.70084 1.40270 1.13804 1.33101 0.85565 0.78617 0.77575 0.79692 1.19332 1.20784 1.19231 0.89575 0.89904 0.91589 0.83234 0.83023 0.83756 0.90828 0.91089 0.92996 0.93541 0.98887 0.98651 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.21 71.23 0.66 -2.21 16 2 C -0.06 -1.59 5.88 -19.88 -0.12 -1.70 16 3 C -0.16 -3.74 9.68 22.31 0.22 -3.52 16 4 C 0.08 1.86 7.30 22.38 0.16 2.03 16 5 F -0.15 -3.69 17.27 44.97 0.78 -2.92 16 6 C -0.16 -3.69 10.03 22.31 0.22 -3.47 16 7 C -0.09 -2.33 9.68 22.26 0.22 -2.11 16 8 C -0.09 -2.64 5.13 -19.86 -0.10 -2.74 16 9 C -0.07 -2.41 4.65 29.85 0.14 -2.27 16 10 C -0.09 -3.58 4.94 30.59 0.15 -3.42 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 16 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 22 H 0.07 1.82 5.40 -2.39 -0.01 1.80 16 23 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 24 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 25 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 26 H 0.07 2.33 7.00 -2.39 -0.02 2.31 16 27 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 28 H 0.05 2.05 6.88 -2.39 -0.02 2.04 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -62.92 275.66 6.57 -56.35 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.10 Total: 4.78 kcal Atomic # 6 Polarization: -50.57 SS G_CDS: 2.39 Total: -48.19 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -62.92 6.57 -56.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250063135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.933 kcal (2) G-P(sol) polarization free energy of solvation -62.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds