Wall clock time and date at job start Sun Mar 29 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.08995 * 109.46612 * 174.83909 * 3 2 1 5 5 C 1.50701 * 109.46829 * 54.84500 * 3 2 1 6 6 H 1.08004 * 119.99705 * 239.99484 * 5 3 2 7 7 C 1.37875 * 120.00162 * 60.00057 * 5 3 2 8 8 N 1.31512 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99767 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47097 * 119.99700 * 9 7 5 12 12 H 1.48500 * 109.47096 * 239.99588 * 9 7 5 13 13 N 1.46893 * 109.47283 * 294.84323 * 3 2 1 14 14 C 1.46902 * 111.00012 * 273.82364 * 13 3 2 15 15 C 1.52997 * 109.47288 * 185.18077 * 14 13 3 16 16 N 1.46501 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.36346 * 125.63215 * 269.69544 * 16 15 14 18 18 C 1.34852 * 108.21836 * 179.83140 * 17 16 15 19 19 C 1.40894 * 107.41327 * 0.42476 * 18 17 16 20 20 C 1.34852 * 107.41960 * 359.73343 * 19 18 17 21 21 H 1.08997 * 109.47297 * 178.00625 * 1 2 3 22 22 H 1.08996 * 109.47419 * 298.00850 * 1 2 3 23 23 H 1.09009 * 109.47170 * 58.00567 * 1 2 3 24 24 H 1.08997 * 109.46875 * 240.00025 * 2 1 3 25 25 H 1.09000 * 109.46979 * 120.00164 * 2 1 3 26 26 H 0.97008 * 119.99612 * 180.02562 * 8 7 5 27 27 H 1.00901 * 111.00462 * 37.77694 * 13 3 2 28 28 H 1.09001 * 109.47527 * 305.18399 * 14 13 3 29 29 H 1.09009 * 109.47033 * 65.18016 * 14 13 3 30 30 H 1.09002 * 109.47090 * 300.00028 * 15 14 13 31 31 H 1.09000 * 109.47291 * 60.00251 * 15 14 13 32 32 H 1.08006 * 125.89333 * 359.95489 * 17 16 15 33 33 H 1.07998 * 126.29349 * 180.15808 * 18 17 16 34 34 H 1.08000 * 126.28717 * 179.73688 * 19 18 17 35 35 H 1.07996 * 125.88698 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4438 0.0924 5 6 1.4361 2.1887 1.1617 6 1 0.8270 3.0628 0.9841 7 6 1.6613 1.7558 2.4512 8 7 2.4027 0.6914 2.6674 9 14 0.9133 2.6813 3.8911 10 1 0.1278 3.8350 3.3838 11 1 0.0212 1.7719 4.6544 12 1 1.9965 3.1731 4.7799 13 7 1.6547 2.0981 -1.2568 14 6 2.6465 1.8422 -2.3097 15 6 2.2803 2.6430 -3.5609 16 7 3.2691 2.3872 -4.6112 17 6 4.4112 3.1026 -4.8181 18 6 5.0608 2.5647 -5.8703 19 6 4.2867 1.4834 -6.3359 20 6 3.1964 1.3982 -5.5468 21 1 -0.3634 -1.0270 -0.0358 22 1 -0.3634 0.4826 0.9073 23 1 -0.3634 0.5445 -0.8716 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5608 0.3866 3.5747 27 1 0.7338 1.8071 -1.5490 28 1 3.6336 2.1450 -1.9605 29 1 2.6562 0.7787 -2.5490 30 1 1.2932 2.3401 -3.9102 31 1 2.2706 3.7064 -3.3217 32 1 4.7400 3.9523 -4.2381 33 1 5.9996 2.9033 -6.2831 34 1 4.5230 0.8409 -7.1712 35 1 2.4029 0.6716 -5.6398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:45 Heat of formation + Delta-G solvation = 44.222729 kcal Electronic energy + Delta-G solvation = -14950.257771 eV Core-core repulsion = 12562.947825 eV Total energy + Delta-G solvation = -2387.309946 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90440 -36.81601 -33.87525 -31.93010 -30.42060 -28.60515 -27.51239 -25.62914 -23.32432 -22.21858 -20.28973 -19.76530 -19.39245 -17.16730 -16.21504 -15.19660 -14.78194 -14.51607 -13.85874 -13.59948 -13.26091 -13.01903 -12.53487 -12.48392 -12.16360 -11.91788 -11.78723 -11.66335 -11.05560 -10.96482 -10.73157 -10.57403 -10.04049 -9.87800 -9.63442 -9.07265 -8.42504 -8.39130 -7.99960 -7.38809 -6.02404 -4.04600 2.47183 3.15898 3.20869 3.28425 3.36942 3.41498 4.40543 4.92865 5.06509 5.27640 5.29633 5.38364 5.50770 5.59845 5.69401 5.79379 6.06323 6.25620 6.28081 6.30080 6.41575 6.47909 6.50446 6.82179 7.15738 7.17212 7.19072 7.41972 7.43189 7.57889 7.62367 7.82132 8.19518 8.40814 8.51617 9.00945 9.59431 11.04748 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.047546 B = 0.005525 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.763415 B = 5066.403155 C = 5283.076043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.490 4.490 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.047 3.953 15 C 0.106 3.894 16 N -0.441 5.441 17 C -0.011 4.011 18 C -0.211 4.211 19 C -0.209 4.209 20 C -0.017 4.017 21 H 0.023 0.977 22 H 0.066 0.934 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.094 0.906 26 H 0.259 0.741 27 H 0.327 0.673 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 1.348 -12.192 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.314 5.314 14 C -0.083 4.083 15 C -0.016 4.016 16 N -0.115 5.115 17 C -0.142 4.142 18 C -0.235 4.235 19 C -0.234 4.234 20 C -0.147 4.147 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.317 1.929 -11.574 11.738 hybrid contribution -0.490 -0.647 0.657 1.044 sum -0.173 1.282 -10.917 10.993 Atomic orbital electron populations 1.21565 0.97582 0.98059 1.01279 1.22109 0.95075 1.01005 1.00351 1.19222 0.96054 0.88685 0.85131 0.94931 1.21081 1.30650 1.11563 0.89581 0.91907 1.24922 0.95503 0.95166 0.98797 1.69894 1.38965 1.23978 1.20699 0.86498 0.78958 0.79857 0.82451 1.19727 1.21195 1.21152 1.60795 1.03593 1.63383 1.03590 1.22196 0.98294 0.96587 0.91264 1.21935 0.90492 1.02565 0.86652 1.44250 1.18519 1.24574 1.24199 1.21870 0.89318 1.01055 1.01967 1.20838 1.01771 1.00568 1.00353 1.20831 0.96916 1.02334 1.03327 1.21812 1.02281 0.96489 0.94144 0.95796 0.91489 0.95183 0.97145 0.88776 0.93096 0.85473 0.91079 0.95791 0.89891 0.88573 0.82371 0.85140 0.85196 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.39 37.16 0.35 -2.29 16 2 C -0.15 -3.36 5.51 -26.73 -0.15 -3.50 16 3 C 0.22 5.23 2.33 -68.87 -0.16 5.07 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -12.96 7.38 -34.44 -0.25 -13.22 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.53 5.26 -17.82 -0.09 1.43 16 8 N -0.90 -25.01 11.38 55.43 0.63 -24.38 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -13.64 6.21 -107.95 -0.67 -14.31 16 14 C 0.05 0.82 5.83 -3.82 -0.02 0.80 16 15 C 0.11 1.47 6.39 -4.04 -0.03 1.44 16 16 N -0.44 -6.24 2.75 -117.13 -0.32 -6.57 16 17 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 18 C -0.21 -2.84 10.86 -39.78 -0.43 -3.27 16 19 C -0.21 -2.81 10.86 -39.78 -0.43 -3.24 16 20 C -0.02 -0.23 11.43 -16.75 -0.19 -0.42 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.52 7.12 -51.93 -0.37 1.15 16 23 H 0.03 0.55 6.36 -51.92 -0.33 0.22 16 24 H 0.01 0.21 7.52 -51.93 -0.39 -0.18 16 25 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.33 6.13 6.58 -39.29 -0.26 5.87 16 28 H 0.07 1.33 7.92 -51.93 -0.41 0.92 16 29 H 0.02 0.43 7.55 -51.92 -0.39 0.04 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -28.06 287.65 -8.03 -36.09 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.38 Total: 6.41 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.60 Total: -17.55 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.36 Total: -45.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.06 -8.03 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.310 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds