Wall clock time and date at job start Sun Mar 29 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.08995 * 109.46612 * 174.83909 * 3 2 1 5 5 C 1.50701 * 109.46829 * 54.84500 * 3 2 1 6 6 H 1.08004 * 119.99705 * 239.99484 * 5 3 2 7 7 C 1.37875 * 120.00162 * 60.00057 * 5 3 2 8 8 N 1.31512 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99767 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47097 * 119.99700 * 9 7 5 12 12 H 1.48500 * 109.47096 * 239.99588 * 9 7 5 13 13 N 1.46893 * 109.47283 * 294.84323 * 3 2 1 14 14 C 1.46902 * 111.00012 * 273.82364 * 13 3 2 15 15 C 1.52997 * 109.47288 * 185.18077 * 14 13 3 16 16 N 1.46501 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.36346 * 125.63215 * 269.69544 * 16 15 14 18 18 C 1.34852 * 108.21836 * 179.83140 * 17 16 15 19 19 C 1.40894 * 107.41327 * 0.42476 * 18 17 16 20 20 C 1.34852 * 107.41960 * 359.73343 * 19 18 17 21 21 H 1.08997 * 109.47297 * 178.00625 * 1 2 3 22 22 H 1.08996 * 109.47419 * 298.00850 * 1 2 3 23 23 H 1.09009 * 109.47170 * 58.00567 * 1 2 3 24 24 H 1.08997 * 109.46875 * 240.00025 * 2 1 3 25 25 H 1.09000 * 109.46979 * 120.00164 * 2 1 3 26 26 H 0.97008 * 119.99612 * 180.02562 * 8 7 5 27 27 H 1.00901 * 111.00462 * 37.77694 * 13 3 2 28 28 H 1.09001 * 109.47527 * 305.18399 * 14 13 3 29 29 H 1.09009 * 109.47033 * 65.18016 * 14 13 3 30 30 H 1.09002 * 109.47090 * 300.00028 * 15 14 13 31 31 H 1.09000 * 109.47291 * 60.00251 * 15 14 13 32 32 H 1.08006 * 125.89333 * 359.95489 * 17 16 15 33 33 H 1.07998 * 126.29349 * 180.15808 * 18 17 16 34 34 H 1.08000 * 126.28717 * 179.73688 * 19 18 17 35 35 H 1.07996 * 125.88698 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4438 0.0924 5 6 1.4361 2.1887 1.1617 6 1 0.8270 3.0628 0.9841 7 6 1.6613 1.7558 2.4512 8 7 2.4027 0.6914 2.6674 9 14 0.9133 2.6813 3.8911 10 1 0.1278 3.8350 3.3838 11 1 0.0212 1.7719 4.6544 12 1 1.9965 3.1731 4.7799 13 7 1.6547 2.0981 -1.2568 14 6 2.6465 1.8422 -2.3097 15 6 2.2803 2.6430 -3.5609 16 7 3.2691 2.3872 -4.6112 17 6 4.4112 3.1026 -4.8181 18 6 5.0608 2.5647 -5.8703 19 6 4.2867 1.4834 -6.3359 20 6 3.1964 1.3982 -5.5468 21 1 -0.3634 -1.0270 -0.0358 22 1 -0.3634 0.4826 0.9073 23 1 -0.3634 0.5445 -0.8716 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5608 0.3866 3.5747 27 1 0.7338 1.8071 -1.5490 28 1 3.6336 2.1450 -1.9605 29 1 2.6562 0.7787 -2.5490 30 1 1.2932 2.3401 -3.9102 31 1 2.2706 3.7064 -3.3217 32 1 4.7400 3.9523 -4.2381 33 1 5.9996 2.9033 -6.2831 34 1 4.5230 0.8409 -7.1712 35 1 2.4029 0.6716 -5.6398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:44 Heat of formation + Delta-G solvation = 28.461593 kcal Electronic energy + Delta-G solvation = -14950.941225 eV Core-core repulsion = 12562.947825 eV Total energy + Delta-G solvation = -2387.993400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.93869 -38.52744 -35.38978 -33.66632 -31.99416 -29.61651 -29.08413 -27.32686 -25.15909 -23.58811 -21.36151 -21.22656 -20.77936 -18.41453 -18.00126 -16.82841 -16.64964 -15.74257 -15.33836 -15.04518 -14.65894 -14.35558 -14.22252 -13.98014 -13.50853 -13.24458 -13.04165 -12.89610 -12.81026 -12.49230 -12.45337 -12.36537 -11.89691 -11.66835 -11.44892 -11.01444 -10.45940 -9.50202 -9.07374 -9.01640 -8.07401 -6.16316 1.41523 1.42050 1.45347 1.56070 2.08887 2.18667 2.45740 3.22167 3.64738 3.81263 4.11845 4.28095 4.38813 4.41708 4.50543 4.52360 4.61326 4.70307 4.78909 4.86516 4.90610 5.07602 5.30666 5.38561 5.42389 5.46583 5.66667 5.72109 5.79351 6.14683 6.27293 6.39572 6.53202 6.58984 6.78685 6.95922 7.51889 8.98499 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.047546 B = 0.005525 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.763415 B = 5066.403155 C = 5283.076043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.222 3.778 4 H -0.007 1.007 5 C -0.499 4.499 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.056 3.944 15 C 0.118 3.882 16 N -0.449 5.449 17 C -0.030 4.030 18 C -0.221 4.221 19 C -0.221 4.221 20 C -0.028 4.028 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.022 0.978 25 H 0.060 0.940 26 H 0.259 0.741 27 H 0.338 0.662 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 1.686 -13.232 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.212 1.212 13 N -0.313 5.313 14 C -0.075 4.075 15 C -0.004 4.004 16 N -0.124 5.124 17 C -0.160 4.160 18 C -0.245 4.245 19 C -0.246 4.246 20 C -0.158 4.158 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.724 2.274 -12.639 12.863 hybrid contribution -0.101 -0.768 0.916 1.200 sum -0.825 1.505 -11.724 11.849 Atomic orbital electron populations 1.21457 0.95508 0.99504 1.01162 1.21958 0.96846 0.99839 0.99284 1.18960 0.93494 0.89614 0.86635 0.98897 1.21309 1.30388 1.11434 0.90639 0.92506 1.25623 0.95913 0.95875 1.01189 1.70029 1.40061 1.25212 1.21047 0.85571 0.78140 0.78844 0.79464 1.19068 1.20792 1.21236 1.60614 1.04693 1.62889 1.03062 1.22109 0.96596 0.96898 0.91875 1.21760 0.91345 1.02164 0.85100 1.44315 1.18733 1.25040 1.24353 1.22242 0.89492 1.01731 1.02514 1.21180 1.02421 1.00611 1.00313 1.21183 0.96901 1.02571 1.03911 1.22263 1.02997 0.96621 0.93911 0.93786 0.93824 0.92780 0.95895 0.92100 0.93214 0.84273 0.93256 0.96276 0.87741 0.88019 0.81174 0.83599 0.83476 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 9.39 71.98 0.68 -4.06 16 2 C -0.14 -6.40 5.51 30.59 0.17 -6.23 16 3 C 0.22 10.79 2.33 44.17 0.10 10.89 16 4 H -0.01 -0.39 7.70 -2.39 -0.02 -0.41 16 5 C -0.50 -26.49 7.38 25.60 0.19 -26.30 16 6 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.65 5.26 84.65 0.45 1.10 16 8 N -0.92 -52.41 11.38 21.45 0.24 -52.16 16 9 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.68 -26.62 6.21 -495.45 -3.08 -29.69 16 14 C 0.06 1.89 5.83 86.30 0.50 2.39 16 15 C 0.12 3.05 6.39 86.38 0.55 3.60 16 16 N -0.45 -11.96 2.75 -524.47 -1.44 -13.40 16 17 C -0.03 -0.78 11.43 83.21 0.95 0.17 16 18 C -0.22 -5.63 10.86 22.14 0.24 -5.38 16 19 C -0.22 -5.52 10.86 22.14 0.24 -5.28 16 20 C -0.03 -0.70 11.43 83.21 0.95 0.25 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.04 1.93 7.12 -2.39 -0.02 1.92 16 23 H 0.05 1.86 6.36 -2.38 -0.02 1.85 16 24 H 0.02 0.96 7.52 -2.39 -0.02 0.94 16 25 H 0.06 3.22 6.22 -2.39 -0.01 3.20 16 26 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 27 H 0.34 11.96 6.58 -89.69 -0.59 11.37 16 28 H 0.05 1.87 7.92 -2.39 -0.02 1.85 16 29 H 0.02 0.66 7.55 -2.38 -0.02 0.65 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -59.78 287.65 3.24 -56.54 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.47 Total: 22.48 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 5.02 Total: -28.86 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -4.27 Total: -95.26 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -59.78 3.24 -56.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.998 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds