Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31208 * 1 3 3 Si 1.86810 * 119.99622 * 2 1 4 4 H 1.48505 * 109.46587 * 87.86004 * 3 2 1 5 5 H 1.48492 * 109.47231 * 207.86202 * 3 2 1 6 6 H 1.48501 * 109.47186 * 327.86392 * 3 2 1 7 7 C 1.39032 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 186.53793 * 7 2 1 9 9 N 1.37361 * 119.99709 * 6.53658 * 7 2 1 10 10 N 1.28895 * 126.39478 * 6.31294 * 9 7 2 11 11 N 1.28568 * 109.78482 * 179.97438 * 10 9 7 12 12 C 1.34007 * 109.79667 * 0.02562 * 11 10 9 13 13 C 1.48199 * 126.34914 * 180.02562 * 12 11 10 14 14 C 1.35021 * 122.98459 * 0.02562 * 13 12 11 15 15 S 1.76179 * 107.85399 * 180.02562 * 14 13 12 16 16 C 1.70913 * 90.45095 * 359.97438 * 15 14 13 17 17 N 1.28767 * 110.52627 * 359.73440 * 16 15 14 18 18 N 1.32161 * 107.30308 * 359.71959 * 12 11 10 19 19 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 20 20 H 1.07997 * 126.07253 * 0.03590 * 14 13 12 21 21 H 1.07991 * 124.73369 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2460 1.6179 0.0000 4 1 2.4482 2.0726 1.3992 5 1 3.5654 1.4278 -0.6543 6 1 1.4667 2.6393 -0.7447 7 6 2.0074 -1.2040 -0.0005 8 1 3.0820 -1.2071 0.1059 9 7 1.3273 -2.3897 -0.1365 10 7 0.0697 -2.5260 -0.3840 11 7 -0.2288 -3.7750 -0.4456 12 6 0.8678 -4.5149 -0.2312 13 6 0.9406 -5.9950 -0.2208 14 6 -0.1330 -6.7853 -0.4352 15 16 0.4009 -8.4611 -0.3333 16 6 1.9996 -7.9467 -0.0163 17 7 2.0665 -6.6608 -0.0061 18 7 1.8737 -3.6798 -0.0375 19 1 -0.4851 0.8400 0.0004 20 1 -1.1401 -6.4497 -0.6339 21 1 2.8375 -8.6078 0.1482 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307401969.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = 166.977668 kcal Electronic energy + Delta-G solvation = -12214.256013 eV Core-core repulsion = 9834.389548 eV Total energy + Delta-G solvation = -2379.866465 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.022 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.14165 -39.19391 -34.50783 -31.82365 -31.06081 -29.60303 -26.27099 -25.19722 -22.27286 -21.85138 -19.39388 -18.10450 -17.61674 -15.69844 -15.38929 -14.96758 -14.50603 -13.95903 -13.86190 -12.96089 -12.27889 -12.20378 -11.54578 -11.51680 -11.35530 -10.71524 -10.36598 -9.87767 -9.41243 -9.36703 -9.22008 -9.02982 -8.86647 -8.16691 -7.06862 -4.90941 0.92045 1.58837 1.89625 2.52259 2.85742 2.87982 2.97495 3.29690 3.51552 4.12087 4.25600 4.53719 4.61121 5.26443 5.54189 5.72249 6.13880 6.44632 6.67898 7.09210 7.47573 7.78022 8.03626 8.12250 8.88467 9.89682 10.29412 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.093806 B = 0.006239 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.416259 B = 4486.500712 C = 4769.198950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.044 3.956 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.256 1.256 6 H -0.270 1.270 7 C -0.272 4.272 8 H 0.135 0.865 9 N 0.007 4.993 10 N -0.075 5.075 11 N -0.377 5.377 12 C 0.187 3.813 13 C 0.178 3.822 14 C -0.221 4.221 15 S 0.098 5.902 16 C 0.020 3.980 17 N -0.444 5.444 18 N -0.376 5.376 19 H 0.290 0.710 20 H 0.186 0.814 21 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -8.290 -0.211 8.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.179 1.179 6 H -0.194 1.194 7 C -0.419 4.419 8 H 0.153 0.847 9 N 0.114 4.886 10 N -0.058 5.058 11 N -0.244 5.244 12 C -0.095 4.095 13 C 0.045 3.955 14 C -0.363 4.363 15 S 0.348 5.652 16 C -0.280 4.280 17 N -0.157 5.157 18 N -0.226 5.226 19 H 0.101 0.899 20 H 0.204 0.796 21 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.083 -8.492 -0.294 8.566 hybrid contribution 0.568 1.162 0.123 1.299 sum 1.651 -7.330 -0.171 7.516 Atomic orbital electron populations 1.70103 1.06708 1.30199 1.30815 1.25993 0.96051 1.01276 0.94585 0.85424 0.79507 0.77534 0.79522 1.18899 1.17946 1.19416 1.20329 0.93979 0.78158 1.49396 0.84728 1.49020 1.03826 1.05322 1.30430 1.78835 0.97549 1.08878 1.20514 1.75189 1.25590 0.97192 1.26423 1.21750 0.89600 0.91461 1.06657 1.17074 0.86976 0.89878 1.01586 1.27027 1.04790 0.93565 1.10897 1.83741 1.06465 1.08245 1.66739 1.28267 1.00666 0.94034 1.05010 1.66082 1.28998 1.06221 1.14394 1.78955 1.21311 0.87971 1.34408 0.89890 0.79642 0.78362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.46 11.98 55.50 0.66 -18.79 14 2 C 0.04 1.05 5.48 -17.52 -0.10 0.96 14 3 Si 0.96 17.44 29.56 -169.99 -5.02 12.42 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.26 -4.50 7.11 56.52 0.40 -4.10 14 6 H -0.27 -4.78 7.11 56.52 0.40 -4.37 14 7 C -0.27 -7.19 10.61 -14.78 -0.16 -7.35 14 8 H 0.14 3.23 7.84 -52.49 -0.41 2.82 14 9 N 0.01 0.22 4.38 31.62 0.14 0.36 14 10 N -0.07 -2.24 11.17 60.35 0.67 -1.57 14 11 N -0.38 -10.64 12.25 32.15 0.39 -10.24 14 12 C 0.19 4.99 8.12 -156.13 -1.27 3.73 14 13 C 0.18 3.87 6.72 -84.61 -0.57 3.30 14 14 C -0.22 -3.86 11.12 29.59 0.33 -3.54 14 15 S 0.10 1.24 23.21 -107.50 -2.49 -1.26 14 16 C 0.02 0.29 12.19 51.48 0.63 0.92 14 17 N -0.44 -8.84 10.55 -12.28 -0.13 -8.97 14 18 N -0.38 -10.76 12.74 32.16 0.41 -10.35 14 19 H 0.29 6.65 8.30 -40.82 -0.34 6.31 14 20 H 0.19 3.08 8.06 -52.49 -0.42 2.65 14 21 H 0.20 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 223.67 15.07 3.37 3.37 Total: -1.00 -32.94 223.67 -3.52 -36.47 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -0.39 Total: 0.54 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.13 Total: -1.98 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 2.15 Total: -49.56 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.02 Total: 12.42 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.94 -3.52 -36.47 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307401969.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.443 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds