Wall clock time and date at job start Sun Mar 29 2020 21:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33650 * 125.80297 * 2 1 4 4 C 1.34210 * 110.91335 * 179.73083 * 3 2 1 5 5 C 1.34180 * 109.12228 * 0.44921 * 4 3 2 6 6 C 1.36418 * 125.80189 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19416 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99969 * 321.29197 * 7 6 2 9 9 N 1.34778 * 120.00320 * 141.29196 * 7 6 2 10 10 C 1.46500 * 119.99708 * 5.18521 * 9 7 6 11 11 C 1.46496 * 119.99862 * 185.18098 * 9 7 6 12 12 C 1.50701 * 109.47048 * 90.00609 * 11 9 7 13 13 H 1.08005 * 119.99867 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00197 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47167 * 89.99722 * 16 14 12 18 18 H 1.48501 * 109.46756 * 209.99646 * 16 14 12 19 19 H 1.48497 * 109.47066 * 329.99697 * 16 14 12 20 20 H 1.09001 * 109.46919 * 269.99466 * 1 2 3 21 21 H 1.09000 * 109.47205 * 30.00029 * 1 2 3 22 22 H 1.09000 * 109.47048 * 150.00610 * 1 2 3 23 23 H 1.08000 * 125.44642 * 180.28659 * 4 3 2 24 24 H 1.08000 * 127.02366 * 179.83322 * 5 4 3 25 25 H 1.08999 * 109.47285 * 84.54689 * 10 9 7 26 26 H 1.08993 * 109.46857 * 204.54791 * 10 9 7 27 27 H 1.09001 * 109.47044 * 324.54852 * 10 9 7 28 28 H 1.09000 * 109.46733 * 209.99764 * 11 9 7 29 29 H 1.08995 * 109.47917 * 330.00074 * 11 9 7 30 30 H 0.97003 * 119.99775 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7391 0.0059 5 6 3.6850 -0.5990 0.0000 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0017 8 8 0.9100 -2.8573 0.6564 9 7 2.5482 -3.4261 -0.7319 10 6 3.7747 -3.0393 -1.4335 11 6 2.0545 -4.8022 -0.8240 12 6 1.1199 -4.9229 -2.0001 13 1 0.9139 -4.0606 -2.6169 14 6 0.5269 -6.1339 -2.2880 15 7 0.7772 -7.1838 -1.5366 16 14 -0.6322 -6.2833 -3.7453 17 1 0.1414 -6.6558 -4.9569 18 1 -1.6474 -7.3302 -3.4649 19 1 -1.3119 -4.9828 -3.9725 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 4.4172 1.4284 0.0116 24 1 4.5929 -1.1839 0.0000 25 1 4.6208 -3.1052 -0.7495 26 1 3.9370 -3.7093 -2.2778 27 1 3.6790 -2.0155 -1.7953 28 1 2.8961 -5.4819 -0.9576 29 1 1.5216 -5.0592 0.0914 30 1 0.3603 -8.0359 -1.7393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:25 Heat of formation + Delta-G solvation = -20.517204 kcal Electronic energy + Delta-G solvation = -15159.522794 eV Core-core repulsion = 12535.853757 eV Total energy + Delta-G solvation = -2623.669037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.34312 -38.60664 -34.80137 -33.02033 -32.31452 -31.65530 -27.96472 -26.77920 -25.65439 -23.57666 -21.81855 -20.53855 -18.45021 -16.95498 -16.51348 -16.11594 -15.47175 -15.26315 -14.39616 -14.22127 -13.79598 -13.04821 -12.79669 -12.77841 -12.53920 -12.14266 -12.10452 -11.64639 -11.54032 -11.16315 -10.89543 -10.56944 -10.15399 -9.67612 -9.46837 -9.02268 -8.43420 -8.35573 -7.59462 -6.03756 -4.08897 1.75880 2.34218 3.00771 3.30321 3.36715 3.40853 3.72781 4.12705 4.45251 4.73039 5.12709 5.14425 5.29967 5.43152 5.69258 5.72781 5.79611 5.83709 5.96770 6.00253 6.27041 6.33128 6.48596 7.06631 7.25133 7.46716 7.57135 7.93118 8.23995 8.44733 8.90435 9.11736 9.56323 11.04229 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038203 B = 0.007561 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.745471 B = 3702.402555 C = 3973.707071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.052 3.948 3 O -0.181 6.181 4 C -0.051 4.051 5 C -0.186 4.186 6 C -0.224 4.224 7 C 0.577 3.423 8 O -0.541 6.541 9 N -0.594 5.594 10 C 0.084 3.916 11 C 0.244 3.756 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.088 0.912 21 H 0.074 0.926 22 H 0.098 0.902 23 H 0.204 0.796 24 H 0.156 0.844 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 14.078 0.908 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 O -0.078 6.078 4 C -0.117 4.117 5 C -0.206 4.206 6 C -0.228 4.228 7 C 0.364 3.636 8 O -0.420 6.420 9 N -0.325 5.325 10 C -0.060 4.060 11 C 0.125 3.875 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.106 0.894 21 H 0.093 0.907 22 H 0.116 0.884 23 H 0.220 0.780 24 H 0.174 0.826 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.322 13.941 1.262 14.976 hybrid contribution -0.186 -0.354 -0.898 0.984 sum 5.136 13.587 0.363 14.530 Atomic orbital electron populations 1.20416 0.84098 1.04232 1.04218 1.22654 0.93924 0.83053 1.00366 1.83698 1.16998 1.35096 1.72043 1.23749 0.83641 0.96271 1.08017 1.23012 0.96944 0.94232 1.06381 1.21511 0.93157 0.94919 1.13228 1.17191 0.82950 0.83397 0.80105 1.90748 1.27876 1.80395 1.42969 1.47983 1.24598 1.12730 1.47180 1.21780 0.86502 1.00803 0.96906 1.19330 0.94827 0.74891 0.98406 1.21451 1.27155 0.95665 1.12371 0.92443 1.24941 0.96642 0.95608 0.96912 1.69938 1.44023 1.00777 1.38599 0.86490 0.80655 0.77892 0.82353 1.20630 1.21042 1.19879 0.89371 0.90736 0.88367 0.77975 0.82613 0.93967 0.90870 0.92025 0.94905 0.93587 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.88 36.01 0.36 -0.69 16 2 C 0.05 0.84 7.37 -34.96 -0.26 0.59 16 3 O -0.18 -2.57 10.52 7.67 0.08 -2.49 16 4 C -0.05 -0.60 12.03 29.30 0.35 -0.25 16 5 C -0.19 -2.61 8.83 -37.45 -0.33 -2.94 16 6 C -0.22 -4.06 5.44 -103.28 -0.56 -4.63 16 7 C 0.58 13.07 7.32 -12.54 -0.09 12.98 16 8 O -0.54 -14.18 15.89 5.26 0.08 -14.10 16 9 N -0.59 -13.41 2.86 -184.26 -0.53 -13.94 16 10 C 0.08 1.45 9.10 59.85 0.54 1.99 16 11 C 0.24 6.58 5.18 -5.20 -0.03 6.56 16 12 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.10 1.61 7.65 -51.93 -0.40 1.22 16 23 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 24 H 0.16 1.85 6.66 -52.49 -0.35 1.50 16 25 H 0.04 0.61 7.42 -51.93 -0.39 0.23 16 26 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 27 H 0.06 0.95 5.92 -51.93 -0.31 0.65 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -33.94 264.98 -4.56 -38.50 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.47 Total: -2.57 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.44 Total: -0.25 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.21 Total: -40.01 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.16 Total: -16.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.94 -4.56 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.980 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds