Wall clock time and date at job start Sun Mar 29 2020 21:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33650 * 125.80297 * 2 1 4 4 C 1.34210 * 110.91335 * 179.73083 * 3 2 1 5 5 C 1.34180 * 109.12228 * 0.44921 * 4 3 2 6 6 C 1.36418 * 125.80189 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19416 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99969 * 321.29197 * 7 6 2 9 9 N 1.34778 * 120.00320 * 141.29196 * 7 6 2 10 10 C 1.46500 * 119.99708 * 5.18521 * 9 7 6 11 11 C 1.46496 * 119.99862 * 185.18098 * 9 7 6 12 12 C 1.50701 * 109.47048 * 90.00609 * 11 9 7 13 13 H 1.08005 * 119.99867 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00197 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47167 * 89.99722 * 16 14 12 18 18 H 1.48501 * 109.46756 * 209.99646 * 16 14 12 19 19 H 1.48497 * 109.47066 * 329.99697 * 16 14 12 20 20 H 1.09001 * 109.46919 * 269.99466 * 1 2 3 21 21 H 1.09000 * 109.47205 * 30.00029 * 1 2 3 22 22 H 1.09000 * 109.47048 * 150.00610 * 1 2 3 23 23 H 1.08000 * 125.44642 * 180.28659 * 4 3 2 24 24 H 1.08000 * 127.02366 * 179.83322 * 5 4 3 25 25 H 1.08999 * 109.47285 * 84.54689 * 10 9 7 26 26 H 1.08993 * 109.46857 * 204.54791 * 10 9 7 27 27 H 1.09001 * 109.47044 * 324.54852 * 10 9 7 28 28 H 1.09000 * 109.46733 * 209.99764 * 11 9 7 29 29 H 1.08995 * 109.47917 * 330.00074 * 11 9 7 30 30 H 0.97003 * 119.99775 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7391 0.0059 5 6 3.6850 -0.5990 0.0000 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0017 8 8 0.9100 -2.8573 0.6564 9 7 2.5482 -3.4261 -0.7319 10 6 3.7747 -3.0393 -1.4335 11 6 2.0545 -4.8022 -0.8240 12 6 1.1199 -4.9229 -2.0001 13 1 0.9139 -4.0606 -2.6169 14 6 0.5269 -6.1339 -2.2880 15 7 0.7772 -7.1838 -1.5366 16 14 -0.6322 -6.2833 -3.7453 17 1 0.1414 -6.6558 -4.9569 18 1 -1.6474 -7.3302 -3.4649 19 1 -1.3119 -4.9828 -3.9725 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 4.4172 1.4284 0.0116 24 1 4.5929 -1.1839 0.0000 25 1 4.6208 -3.1052 -0.7495 26 1 3.9370 -3.7093 -2.2778 27 1 3.6790 -2.0155 -1.7953 28 1 2.8961 -5.4819 -0.9576 29 1 1.5216 -5.0592 0.0914 30 1 0.3603 -8.0359 -1.7393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:24 Heat of formation + Delta-G solvation = -43.979825 kcal Electronic energy + Delta-G solvation = -15160.540209 eV Core-core repulsion = 12535.853757 eV Total energy + Delta-G solvation = -2624.686453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.48229 -40.36379 -36.65775 -34.87632 -33.85986 -32.78840 -29.93222 -28.08879 -27.21115 -25.45757 -23.24655 -21.89008 -19.81512 -18.71790 -18.36232 -17.40480 -17.08636 -16.80349 -16.24568 -15.90665 -15.12234 -14.45341 -14.23377 -14.07798 -13.88916 -13.85023 -13.60141 -13.42044 -13.03210 -12.80987 -12.68853 -12.51436 -12.22673 -11.75366 -10.92801 -10.67615 -10.59507 -9.59665 -9.36501 -8.24466 -6.40366 0.49596 1.23707 1.36003 1.39013 1.49667 1.89342 2.09521 2.37479 2.51828 3.04719 3.67976 3.77467 4.03163 4.33333 4.40123 4.57430 4.61238 4.68241 4.75247 4.87373 4.89490 5.00483 5.17539 5.21645 5.44709 5.53176 5.80613 6.02615 6.10928 6.65957 6.72041 7.23458 7.40434 8.82842 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038203 B = 0.007561 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.745471 B = 3702.402555 C = 3973.707071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.051 3.949 3 O -0.176 6.176 4 C -0.021 4.021 5 C -0.200 4.200 6 C -0.260 4.260 7 C 0.569 3.431 8 O -0.594 6.594 9 N -0.602 5.602 10 C 0.082 3.918 11 C 0.259 3.741 12 C -0.547 4.547 13 H 0.052 0.948 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.971 3.029 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.272 1.272 20 H 0.094 0.906 21 H 0.108 0.892 22 H 0.067 0.933 23 H 0.259 0.741 24 H 0.176 0.824 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.000 1.000 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 16.361 -0.329 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.002 4.002 3 O -0.073 6.073 4 C -0.086 4.086 5 C -0.219 4.219 6 C -0.265 4.265 7 C 0.359 3.641 8 O -0.477 6.477 9 N -0.332 5.332 10 C -0.060 4.060 11 C 0.138 3.862 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.197 1.197 20 H 0.112 0.888 21 H 0.126 0.874 22 H 0.086 0.914 23 H 0.274 0.726 24 H 0.194 0.806 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.044 0.956 29 H 0.019 0.981 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.507 16.252 0.007 17.506 hybrid contribution -0.471 -1.010 -0.458 1.205 sum 6.035 15.242 -0.451 16.400 Atomic orbital electron populations 1.20420 0.83564 1.04323 1.04686 1.22815 0.94638 0.83178 0.99547 1.83747 1.18018 1.33963 1.71546 1.24758 0.83506 0.96345 1.04012 1.23204 0.95525 0.95360 1.07855 1.21298 0.96224 0.92460 1.16506 1.17882 0.82050 0.85247 0.78938 1.90696 1.30235 1.81676 1.45099 1.48001 1.26288 1.11167 1.47783 1.22040 0.85053 1.01796 0.97122 1.18823 0.93985 0.77590 0.95812 1.21680 1.28094 0.95836 1.12908 0.92969 1.25890 0.98172 0.95068 0.99944 1.70056 1.44986 1.01388 1.40287 0.85372 0.78386 0.77898 0.78906 1.18720 1.20377 1.19668 0.88754 0.87355 0.91426 0.72563 0.80641 0.90839 0.91277 0.89794 0.95565 0.98149 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 9.88 71.24 0.70 -1.37 16 2 C 0.05 1.59 7.37 25.26 0.19 1.77 16 3 O -0.18 -4.37 10.52 4.53 0.05 -4.32 16 4 C -0.02 -0.40 12.03 66.89 0.80 0.40 16 5 C -0.20 -4.98 8.83 23.65 0.21 -4.77 16 6 C -0.26 -9.29 5.44 -18.99 -0.10 -9.39 16 7 C 0.57 26.68 7.32 86.65 0.63 27.32 16 8 O -0.59 -33.09 15.89 -4.09 -0.06 -33.15 16 9 N -0.60 -27.93 2.86 -855.12 -2.44 -30.37 16 10 C 0.08 2.73 9.10 127.77 1.16 3.89 16 11 C 0.26 14.64 5.18 85.63 0.44 15.08 16 12 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 14 C 0.01 0.49 5.46 84.66 0.46 0.95 16 15 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 16 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 21 H 0.11 2.22 8.14 -2.39 -0.02 2.21 16 22 H 0.07 2.32 7.65 -2.39 -0.02 2.30 16 23 H 0.26 1.82 8.06 -2.91 -0.02 1.79 16 24 H 0.18 3.52 6.66 -2.91 -0.02 3.50 16 25 H 0.07 1.98 7.42 -2.39 -0.02 1.96 16 26 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 27 H 0.08 2.43 5.92 -2.39 -0.01 2.41 16 28 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 29 H 0.00 0.02 7.36 -2.39 -0.02 0.01 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.63 264.98 5.73 -71.90 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.14 Total: 3.57 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.74 Total: 1.65 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.16 Total: -87.01 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.02 Total: -37.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.63 5.73 -71.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.916 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds