Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38112 * 120.03715 * 2 1 4 4 C 1.38291 * 120.07034 * 180.27597 * 3 2 1 5 5 C 1.38332 * 120.14311 * 359.44726 * 4 3 2 6 6 N 1.48013 * 119.96355 * 180.27543 * 5 4 3 7 7 O 1.31700 * 119.99952 * 0.02562 * 6 5 4 8 8 O 1.31698 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.38069 * 120.07207 * 0.25222 * 5 4 3 10 10 C 1.38887 * 120.03576 * 179.70235 * 2 1 3 11 11 O 1.35723 * 120.07295 * 359.97438 * 10 2 1 12 12 C 1.22307 * 117.00014 * 174.30251 * 11 10 2 13 13 H 1.08000 * 120.00313 * 5.09033 * 12 11 10 14 14 C 1.46639 * 120.00032 * 185.10212 * 12 11 10 15 15 N 1.29372 * 119.99586 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47385 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47111 * 119.99568 * 16 14 12 19 19 H 1.48497 * 109.47314 * 239.99477 * 16 14 12 20 20 H 1.09001 * 109.47197 * 270.30080 * 1 2 3 21 21 H 1.09001 * 109.47095 * 30.29950 * 1 2 3 22 22 H 1.09000 * 109.47569 * 150.29734 * 1 2 3 23 23 H 1.08004 * 119.96846 * 359.97438 * 3 2 1 24 24 H 1.08001 * 119.92737 * 179.72460 * 4 3 2 25 25 H 1.07998 * 120.03371 * 179.97438 * 9 5 4 26 26 H 0.97002 * 119.99835 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5811 1.1964 -0.0058 5 6 4.2765 0.0006 0.0000 6 7 5.7566 0.0062 0.0000 7 8 6.4109 1.1492 -0.0051 8 8 6.4194 -1.1319 0.0049 9 6 3.5914 -1.1981 0.0063 10 6 2.2021 -1.2024 0.0062 11 8 1.5257 -2.3790 0.0129 12 6 2.1891 -3.4014 -0.0900 13 1 3.2677 -3.3468 -0.0979 14 6 1.5200 -4.7013 -0.2029 15 7 0.2279 -4.7667 -0.1932 16 14 2.5330 -6.2627 -0.3608 17 1 3.9776 -5.9190 -0.3471 18 1 2.2282 -7.1676 0.7765 19 1 2.1986 -6.9428 -1.6378 20 1 -0.3634 0.0054 1.0277 21 1 -0.3633 0.8873 -0.5185 22 1 -0.3634 -0.8926 -0.5092 23 1 1.6583 2.1310 -0.0004 24 1 4.1194 2.1328 -0.0103 25 1 4.1349 -2.1313 0.0103 26 1 -0.2147 -5.6266 -0.2675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037991595.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = 26.586514 kcal Electronic energy + Delta-G solvation = -14679.009405 eV Core-core repulsion = 11921.549844 eV Total energy + Delta-G solvation = -2757.459561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.36418 -40.43672 -38.80236 -35.57917 -34.82282 -34.00259 -31.34656 -29.43805 -27.66106 -25.91437 -23.63431 -22.64541 -20.69696 -20.13224 -19.05559 -17.71794 -17.15541 -16.87089 -16.49157 -16.40762 -16.22735 -15.00741 -14.82708 -14.26022 -13.99027 -13.28905 -13.06939 -12.88712 -12.79847 -12.65872 -12.37469 -12.26882 -12.15803 -11.93252 -11.47772 -11.07744 -10.14577 -9.55742 -8.86078 -5.88203 -1.76561 0.14599 0.23143 0.30831 1.31308 1.35437 1.45605 2.05946 2.33511 2.82836 3.05410 3.65817 3.83833 3.94281 4.09480 4.15378 4.63966 4.67732 4.82538 4.86434 4.88381 4.91951 5.10634 5.22616 5.43533 5.66408 5.71092 5.81139 6.51500 7.81297 8.34941 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.009776 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.001692 B = 2863.585305 C = 3946.906559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.089 4.089 3 C -0.066 4.066 4 C -0.130 4.130 5 C 0.028 3.972 6 N -0.007 5.007 7 O -0.159 6.159 8 O -0.255 6.255 9 C -0.222 4.222 10 C 0.076 3.924 11 O -0.120 6.120 12 C -0.449 4.449 13 H 0.084 0.916 14 C 0.007 3.993 15 N -0.847 5.847 16 Si 1.008 2.992 17 H -0.264 1.264 18 H -0.257 1.257 19 H -0.257 1.257 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.048 0.952 23 H 0.194 0.806 24 H 0.168 0.832 25 H 0.127 0.873 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 7.337 -0.065 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 C -0.084 4.084 4 C -0.151 4.151 5 C -0.058 4.058 6 N 0.464 4.536 7 O -0.362 6.362 8 O -0.430 6.430 9 C -0.243 4.243 10 C 0.021 3.979 11 O -0.017 6.017 12 C -0.527 4.527 13 H 0.101 0.899 14 C -0.204 4.204 15 N -0.476 5.476 16 Si 0.826 3.174 17 H -0.187 1.187 18 H -0.181 1.181 19 H -0.181 1.181 20 H 0.099 0.901 21 H 0.124 0.876 22 H 0.067 0.933 23 H 0.211 0.789 24 H 0.186 0.814 25 H 0.145 0.855 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.596 6.898 -0.059 7.371 hybrid contribution 1.298 -1.194 -0.020 1.763 sum -1.298 5.705 -0.079 5.851 Atomic orbital electron populations 1.20679 0.88345 1.03539 1.03211 1.19946 0.98257 0.89763 1.01148 1.21114 0.91319 0.98147 0.97829 1.21015 0.95202 0.95574 1.03319 1.20261 0.73957 0.97440 1.14183 1.50838 1.06089 1.01846 0.94786 1.96133 1.71310 1.15020 1.53748 1.96259 1.70566 1.15906 1.60312 1.20425 0.94672 0.97168 1.12084 1.19364 0.88983 0.87802 1.01771 1.80359 1.36956 1.11432 1.72992 1.21169 0.92711 0.84626 1.54148 0.89919 1.27891 0.96717 1.00828 0.94923 1.68937 1.10947 1.29748 1.37970 0.84680 0.78129 0.74942 0.79635 1.18740 1.18083 1.18094 0.90123 0.87647 0.93338 0.78872 0.81408 0.85541 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.93 9.79 71.23 0.70 -2.23 15 2 C -0.09 -3.06 5.90 -19.74 -0.12 -3.18 15 3 C -0.07 -1.76 9.70 22.25 0.22 -1.54 15 4 C -0.13 -4.03 9.58 22.30 0.21 -3.82 15 5 C 0.03 1.13 6.88 36.36 0.25 1.38 15 6 N -0.01 -0.31 4.98 -46.51 -0.23 -0.54 15 7 O -0.16 -6.24 19.15 3.51 0.07 -6.17 15 8 O -0.25 -12.04 19.15 3.52 0.07 -11.97 15 9 C -0.22 -10.11 8.65 22.40 0.19 -9.91 15 10 C 0.08 3.43 6.56 22.59 0.15 3.58 15 11 O -0.12 -6.30 8.33 52.20 0.44 -5.86 15 12 C -0.45 -24.15 9.48 70.01 0.66 -23.48 15 13 H 0.08 4.45 5.02 -2.91 -0.01 4.43 15 14 C 0.01 0.37 5.69 87.25 0.50 0.87 15 15 N -0.85 -44.05 13.66 23.23 0.32 -43.74 15 16 Si 1.01 39.02 29.64 68.60 2.03 41.05 15 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 18 H -0.26 -9.29 7.11 99.48 0.71 -8.59 15 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 20 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.10 2.12 8.09 -2.39 -0.02 2.10 15 22 H 0.05 1.72 7.54 -2.39 -0.02 1.70 15 23 H 0.19 3.06 8.06 -2.91 -0.02 3.04 15 24 H 0.17 4.19 7.57 -2.91 -0.02 4.17 15 25 H 0.13 6.32 5.21 -2.91 -0.02 6.31 15 26 H 0.30 13.70 8.26 -92.71 -0.77 12.93 15 Total: -1.00 -62.29 246.35 6.67 -55.61 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.22 Total: 9.96 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 2.76 Total: -38.34 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.09 Total: -44.28 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.57 Total: -24.01 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -62.29 6.67 -55.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037991595.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.201 kcal (2) G-P(sol) polarization free energy of solvation -62.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds