Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34164 * 127.01950 * 2 1 4 4 O 1.34215 * 109.14492 * 179.97438 * 3 2 1 5 5 C 1.33672 * 110.90986 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.81188 * 179.97438 * 5 4 3 7 7 C 1.36498 * 108.37623 * 359.71200 * 5 4 3 8 8 C 1.47300 * 127.19597 * 180.26359 * 7 5 4 9 9 O 1.21634 * 120.00340 * 270.19346 * 8 7 5 10 10 N 1.34781 * 119.99469 * 90.19477 * 8 7 5 11 11 C 1.46497 * 120.00052 * 359.97438 * 10 8 7 12 12 C 1.36965 * 119.99549 * 179.97438 * 10 8 7 13 13 H 1.07995 * 120.00402 * 22.47176 * 12 10 8 14 14 C 1.38982 * 119.99634 * 202.46922 * 12 10 8 15 15 N 1.31411 * 120.00023 * 11.55853 * 14 12 10 16 16 Si 1.86804 * 119.99633 * 191.55322 * 14 12 10 17 17 H 1.48503 * 109.46524 * 90.00724 * 16 14 12 18 18 H 1.48505 * 109.46819 * 210.00233 * 16 14 12 19 19 H 1.48496 * 109.47376 * 330.00593 * 16 14 12 20 20 H 1.09001 * 109.47193 * 90.01669 * 1 2 3 21 21 H 1.09000 * 109.47115 * 330.02679 * 1 2 3 22 22 H 1.09002 * 109.47543 * 210.01813 * 1 2 3 23 23 H 1.08002 * 125.42781 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.46919 * 359.97259 * 6 5 4 25 25 H 1.08997 * 109.47155 * 119.97319 * 6 5 4 26 26 H 1.09001 * 109.47324 * 239.97690 * 6 5 4 27 27 H 1.08994 * 109.47068 * 92.22434 * 11 10 8 28 28 H 1.09001 * 109.46719 * 212.21764 * 11 10 8 29 29 H 1.08997 * 109.47035 * 332.21805 * 11 10 8 30 30 H 0.97002 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0712 0.0000 4 8 3.5922 0.6593 0.0006 5 6 3.6629 -0.6756 0.0004 6 6 4.9300 -1.4914 0.0003 7 6 2.3922 -1.1739 0.0062 8 6 1.9915 -2.5913 0.0136 9 8 1.8265 -3.1822 -1.0367 10 7 1.8077 -3.2335 1.1842 11 6 2.0070 -2.5220 2.4492 12 6 1.4347 -4.5514 1.1911 13 1 1.6317 -5.1729 0.3302 14 6 0.8026 -5.0888 2.3061 15 7 0.3589 -4.2961 3.2556 16 14 0.5835 -6.9380 2.4548 17 1 1.7596 -7.5214 3.1489 18 1 -0.6463 -7.2296 3.2344 19 1 0.4633 -7.5328 1.0995 20 1 -0.3633 -0.0003 -1.0277 21 1 -0.3633 0.8902 0.5134 22 1 -0.3634 -0.8898 0.5141 23 1 1.9891 2.1009 0.0004 24 1 5.7918 -0.8241 0.0000 25 1 4.9575 -2.1199 0.8905 26 1 4.9572 -2.1204 -0.8895 27 1 1.0590 -2.0990 2.7813 28 1 2.3784 -3.2169 3.2023 29 1 2.7319 -1.7208 2.3051 30 1 -0.0826 -4.6712 4.0337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334335657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = -18.904066 kcal Electronic energy + Delta-G solvation = -15512.814755 eV Core-core repulsion = 12889.215669 eV Total energy + Delta-G solvation = -2623.599086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.99840 -38.12008 -34.59532 -33.35829 -32.08816 -31.34725 -27.74946 -26.37861 -25.94901 -24.53313 -21.91835 -19.33903 -18.64985 -16.96678 -16.55398 -15.85217 -15.22313 -14.42160 -14.20738 -13.95089 -13.41387 -12.95647 -12.81064 -12.54529 -12.43780 -12.17138 -11.90578 -11.68396 -11.38354 -11.17991 -10.86526 -10.75442 -10.35325 -10.28406 -9.06059 -8.85481 -8.46926 -7.91694 -7.66971 -6.30815 -3.87317 2.14437 2.82882 3.16033 3.25185 3.30798 3.34156 3.81852 4.15617 4.87589 5.03919 5.13643 5.40239 5.43011 5.67148 5.79273 5.81826 6.05099 6.07530 6.18076 6.28270 6.42114 6.46580 6.67937 6.92313 6.94975 7.28019 7.56908 7.57402 8.14792 8.50612 9.18795 9.43304 10.01842 10.72608 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038315 B = 0.008819 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.600441 B = 3174.105692 C = 3378.850652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.148 4.148 3 C -0.058 4.058 4 O -0.182 6.182 5 C 0.007 3.993 6 C -0.070 4.070 7 C -0.179 4.179 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.434 5.434 11 C 0.118 3.882 12 C -0.307 4.307 13 H 0.100 0.900 14 C 0.031 3.969 15 N -0.880 5.880 16 Si 0.927 3.073 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.200 0.800 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 8.315 -0.553 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.150 4.150 3 C -0.124 4.124 4 O -0.080 6.080 5 C -0.043 4.043 6 C -0.126 4.126 7 C -0.184 4.184 8 C 0.299 3.701 9 O -0.471 6.471 10 N -0.151 5.151 11 C -0.026 4.026 12 C -0.435 4.435 13 H 0.118 0.882 14 C -0.172 4.172 15 N -0.520 5.520 16 Si 0.754 3.246 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.193 1.193 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.216 0.784 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.367 8.152 -0.840 9.286 hybrid contribution -0.474 -0.757 0.352 0.960 sum 3.893 7.395 -0.488 8.371 Atomic orbital electron populations 1.20148 0.89112 1.02720 1.02007 1.21423 0.96802 0.91150 1.05630 1.23406 0.80086 0.99038 1.09858 1.83626 1.29301 1.22314 1.72751 1.22495 0.96451 0.80392 1.05002 1.20296 0.90666 0.97405 1.04262 1.21417 0.92252 0.95465 1.09257 1.17060 0.84570 0.83917 0.84536 1.90614 1.57333 1.67541 1.31604 1.43509 1.57440 1.10301 1.03893 1.21432 0.99578 0.94844 0.86710 1.19677 1.36190 0.84543 1.03081 0.88248 1.25367 0.95403 1.00292 0.96185 1.70020 1.37111 1.34821 1.10010 0.85905 0.77681 0.82381 0.78627 1.20344 1.20918 1.19304 0.91545 0.91868 0.90828 0.78368 0.90817 0.89535 0.89523 0.92494 0.91433 0.95630 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.38 36.01 0.37 -1.03 16 2 C -0.15 -2.78 6.38 -102.50 -0.65 -3.43 16 3 C -0.06 -0.90 11.96 29.30 0.35 -0.55 16 4 O -0.18 -3.10 10.52 7.60 0.08 -3.02 16 5 C 0.01 0.14 7.05 -34.93 -0.25 -0.11 16 6 C -0.07 -1.07 10.18 36.01 0.37 -0.71 16 7 C -0.18 -3.92 4.28 -103.28 -0.44 -4.36 16 8 C 0.51 13.44 7.23 -12.57 -0.09 13.35 16 9 O -0.59 -17.42 16.80 5.25 0.09 -17.33 16 10 N -0.43 -11.58 3.01 -123.47 -0.37 -11.95 16 11 C 0.12 2.80 8.54 59.85 0.51 3.31 16 12 C -0.31 -8.71 9.28 -14.98 -0.14 -8.85 16 13 H 0.10 2.94 7.40 -52.49 -0.39 2.55 16 14 C 0.03 0.82 5.11 -17.46 -0.09 0.73 16 15 N -0.88 -23.67 10.61 55.50 0.59 -23.08 16 16 Si 0.93 20.85 29.57 -169.99 -5.03 15.83 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 23 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.41 7.53 -51.93 -0.39 1.01 16 28 H 0.07 1.64 7.07 -51.93 -0.37 1.27 16 29 H 0.03 0.54 6.55 -51.93 -0.34 0.20 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -32.58 265.99 -4.27 -36.86 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.58 Total: 0.34 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.06 Total: -1.64 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.22 Total: -35.03 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.17 Total: -20.36 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.58 -4.27 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds