Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34164 * 127.01950 * 2 1 4 4 O 1.34215 * 109.14492 * 179.97438 * 3 2 1 5 5 C 1.33672 * 110.90986 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.81188 * 179.97438 * 5 4 3 7 7 C 1.36498 * 108.37623 * 359.71200 * 5 4 3 8 8 C 1.47300 * 127.19597 * 180.26359 * 7 5 4 9 9 O 1.21634 * 120.00340 * 270.19346 * 8 7 5 10 10 N 1.34781 * 119.99469 * 90.19477 * 8 7 5 11 11 C 1.46497 * 120.00052 * 359.97438 * 10 8 7 12 12 C 1.36965 * 119.99549 * 179.97438 * 10 8 7 13 13 H 1.07995 * 120.00402 * 22.47176 * 12 10 8 14 14 C 1.38982 * 119.99634 * 202.46922 * 12 10 8 15 15 N 1.31411 * 120.00023 * 11.55853 * 14 12 10 16 16 Si 1.86804 * 119.99633 * 191.55322 * 14 12 10 17 17 H 1.48503 * 109.46524 * 90.00724 * 16 14 12 18 18 H 1.48505 * 109.46819 * 210.00233 * 16 14 12 19 19 H 1.48496 * 109.47376 * 330.00593 * 16 14 12 20 20 H 1.09001 * 109.47193 * 90.01669 * 1 2 3 21 21 H 1.09000 * 109.47115 * 330.02679 * 1 2 3 22 22 H 1.09002 * 109.47543 * 210.01813 * 1 2 3 23 23 H 1.08002 * 125.42781 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.46919 * 359.97259 * 6 5 4 25 25 H 1.08997 * 109.47155 * 119.97319 * 6 5 4 26 26 H 1.09001 * 109.47324 * 239.97690 * 6 5 4 27 27 H 1.08994 * 109.47068 * 92.22434 * 11 10 8 28 28 H 1.09001 * 109.46719 * 212.21764 * 11 10 8 29 29 H 1.08997 * 109.47035 * 332.21805 * 11 10 8 30 30 H 0.97002 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0712 0.0000 4 8 3.5922 0.6593 0.0006 5 6 3.6629 -0.6756 0.0004 6 6 4.9300 -1.4914 0.0003 7 6 2.3922 -1.1739 0.0062 8 6 1.9915 -2.5913 0.0136 9 8 1.8265 -3.1822 -1.0367 10 7 1.8077 -3.2335 1.1842 11 6 2.0070 -2.5220 2.4492 12 6 1.4347 -4.5514 1.1911 13 1 1.6317 -5.1729 0.3302 14 6 0.8026 -5.0888 2.3061 15 7 0.3589 -4.2961 3.2556 16 14 0.5835 -6.9380 2.4548 17 1 1.7596 -7.5214 3.1489 18 1 -0.6463 -7.2296 3.2344 19 1 0.4633 -7.5328 1.0995 20 1 -0.3633 -0.0003 -1.0277 21 1 -0.3633 0.8902 0.5134 22 1 -0.3634 -0.8898 0.5141 23 1 1.9891 2.1009 0.0004 24 1 5.7918 -0.8241 0.0000 25 1 4.9575 -2.1199 0.8905 26 1 4.9572 -2.1204 -0.8895 27 1 1.0590 -2.0990 2.7813 28 1 2.3784 -3.2169 3.2023 29 1 2.7319 -1.7208 2.3051 30 1 -0.0826 -4.6712 4.0337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334335657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = -40.376178 kcal Electronic energy + Delta-G solvation = -15513.745856 eV Core-core repulsion = 12889.215669 eV Total energy + Delta-G solvation = -2624.530187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.40045 -40.13730 -36.69606 -34.81846 -33.73988 -33.13527 -29.21537 -28.27630 -27.42109 -26.43886 -23.66030 -20.78005 -20.27404 -18.98841 -18.30376 -17.38821 -16.97650 -16.21915 -16.03100 -15.78401 -14.94406 -14.45620 -14.17271 -14.15810 -13.81436 -13.68482 -13.48214 -13.35102 -13.22062 -13.11233 -12.68248 -12.45448 -12.17305 -12.15284 -11.08585 -10.70882 -10.20912 -9.78001 -9.31387 -8.37870 -6.04527 0.75303 1.34858 1.36473 1.40737 1.53150 1.87266 2.01337 2.27019 3.03182 3.09430 3.66804 3.92211 4.15685 4.27987 4.43538 4.54433 4.59113 4.73118 4.74290 4.83149 4.94452 4.97317 5.10842 5.26578 5.29693 5.40329 5.56046 6.03285 6.18428 6.42593 7.08865 7.37428 7.96108 8.64507 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038315 B = 0.008819 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.600441 B = 3174.105692 C = 3378.850652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.184 4.184 3 C -0.022 4.022 4 O -0.173 6.173 5 C 0.018 3.982 6 C -0.071 4.071 7 C -0.229 4.229 8 C 0.508 3.492 9 O -0.637 6.637 10 N -0.444 5.444 11 C 0.136 3.864 12 C -0.349 4.349 13 H 0.074 0.926 14 C 0.000 4.000 15 N -0.894 5.894 16 Si 0.995 3.005 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.275 1.275 20 H 0.069 0.931 21 H 0.103 0.897 22 H 0.031 0.969 23 H 0.256 0.744 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 9.938 0.310 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.186 4.186 3 C -0.088 4.088 4 O -0.069 6.069 5 C -0.033 4.033 6 C -0.128 4.128 7 C -0.234 4.234 8 C 0.298 3.702 9 O -0.526 6.526 10 N -0.161 5.161 11 C -0.007 4.007 12 C -0.477 4.477 13 H 0.092 0.908 14 C -0.203 4.203 15 N -0.532 5.532 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.200 1.200 20 H 0.087 0.913 21 H 0.122 0.878 22 H 0.050 0.950 23 H 0.272 0.728 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.025 9.805 0.060 11.018 hybrid contribution -0.693 -1.190 0.085 1.380 sum 4.331 8.615 0.145 9.644 Atomic orbital electron populations 1.20119 0.88503 1.02572 1.02184 1.21693 0.97673 0.91005 1.08209 1.24322 0.78583 1.00322 1.05545 1.83686 1.30116 1.21091 1.72048 1.22835 0.96286 0.81185 1.03032 1.20419 0.90868 0.97744 1.03731 1.21255 0.94858 0.93752 1.13491 1.17688 0.83327 0.85617 0.83574 1.90548 1.59444 1.69387 1.33204 1.43730 1.57194 1.10152 1.05028 1.21265 0.99374 0.94803 0.85251 1.19667 1.38906 0.85685 1.03445 0.90823 1.26183 0.94112 1.04855 0.95121 1.70090 1.36340 1.36613 1.10143 0.84924 0.78472 0.76550 0.78328 1.18672 1.19578 1.20030 0.91276 0.87839 0.95001 0.72845 0.86893 0.89808 0.90273 0.93883 0.92401 0.93078 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.55 10.38 71.24 0.74 -1.81 16 2 C -0.18 -6.64 6.38 -18.49 -0.12 -6.76 16 3 C -0.02 -0.60 11.96 66.89 0.80 0.20 16 4 O -0.17 -5.26 10.52 4.29 0.05 -5.21 16 5 C 0.02 0.65 7.05 25.28 0.18 0.83 16 6 C -0.07 -2.09 10.18 71.24 0.72 -1.37 16 7 C -0.23 -10.04 4.28 -19.00 -0.08 -10.12 16 8 C 0.51 27.84 7.23 86.63 0.63 28.47 16 9 O -0.64 -40.08 16.80 -4.14 -0.07 -40.15 16 10 N -0.44 -24.64 3.01 -662.78 -2.00 -26.64 16 11 C 0.14 6.57 8.54 127.77 1.09 7.66 16 12 C -0.35 -20.65 9.28 84.07 0.78 -19.87 16 13 H 0.07 4.63 7.40 -2.91 -0.02 4.61 16 14 C 0.00 -0.03 5.11 84.93 0.43 0.41 16 15 N -0.89 -48.28 10.61 21.67 0.23 -48.05 16 16 Si 0.99 42.95 29.57 68.60 2.03 44.98 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 20 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 21 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.26 3.81 8.06 -2.91 -0.02 3.79 16 24 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.04 2.17 7.53 -2.39 -0.02 2.15 16 28 H 0.06 2.85 7.07 -2.39 -0.02 2.83 16 29 H 0.05 2.15 6.55 -2.39 -0.02 2.14 16 30 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -74.06 265.99 6.55 -67.51 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.14 Total: 9.93 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.17 Total: -2.36 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.77 Total: -74.69 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.02 Total: -45.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -74.06 6.55 -67.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.131 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds