Wall clock time and date at job start Sun Mar 29 2020 21:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47197 * 119.99601 * 2 1 3 5 5 C 1.50702 * 109.47083 * 185.00120 * 4 2 1 6 6 H 1.07998 * 120.00064 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99933 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00046 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46780 * 120.00478 * 9 7 5 12 12 H 1.48492 * 109.47202 * 240.00081 * 9 7 5 13 13 S 1.81397 * 109.47424 * 240.00100 * 2 1 3 14 14 C 1.76204 * 103.00287 * 69.41615 * 13 2 1 15 15 C 1.39556 * 120.87043 * 6.67670 * 14 13 2 16 16 C 1.37856 * 119.05995 * 180.21964 * 15 14 13 17 17 N 1.32015 * 120.84915 * 359.52967 * 16 15 14 18 18 C 1.32015 * 121.92571 * 0.25052 * 17 16 15 19 19 C 1.37866 * 120.84426 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.46898 * 65.64333 * 1 2 3 21 21 H 1.08996 * 109.47176 * 185.63897 * 1 2 3 22 22 H 1.08998 * 109.47166 * 305.64241 * 1 2 3 23 23 H 1.08994 * 109.47203 * 305.00342 * 4 2 1 24 24 H 1.09000 * 109.46818 * 65.00692 * 4 2 1 25 25 H 0.96999 * 120.00676 * 179.97438 * 8 7 5 26 26 H 1.08005 * 120.46557 * 0.03126 * 15 14 13 27 27 H 1.08001 * 119.57217 * 179.80046 * 16 15 14 28 28 H 1.07993 * 119.57489 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.46267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1933 2.3578 8 7 3.5765 -1.8384 3.2991 9 14 6.0922 -1.0621 2.4361 10 1 6.5837 -0.2916 1.2657 11 1 6.4871 -0.3666 3.6874 12 1 6.6855 -2.4232 2.4180 13 16 2.1347 -0.8551 -1.4811 14 6 1.6978 0.2494 -2.7827 15 6 1.1680 1.5101 -2.5044 16 6 0.8349 2.3424 -3.5516 17 7 1.0200 1.9637 -4.8027 18 6 1.5225 0.7815 -5.1071 19 6 1.8773 -0.1116 -4.1186 20 1 -0.3633 0.4238 -0.9362 21 1 -0.3633 -1.0226 0.1010 22 1 -0.3633 0.5988 0.8351 23 1 1.6053 -0.2617 2.1369 24 1 1.7517 -1.7714 1.2056 25 1 4.0609 -2.2458 4.0341 26 1 1.0182 1.8279 -1.4831 27 1 0.4212 3.3186 -3.3458 28 1 1.6574 0.5106 -6.1438 29 1 2.2883 -1.0770 -4.3746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591128161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:45 Heat of formation + Delta-G solvation = 1.205089 kcal Electronic energy + Delta-G solvation = -12567.642250 eV Core-core repulsion = 10387.668033 eV Total energy + Delta-G solvation = -2179.974217 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.79599 -36.57369 -34.28872 -33.30340 -32.13493 -29.41708 -25.30382 -24.75997 -24.42766 -22.27262 -18.90022 -18.53271 -17.33811 -17.09749 -16.55648 -16.31892 -15.33441 -14.98191 -14.82533 -14.53574 -14.17128 -13.59796 -13.35690 -12.90483 -12.77016 -12.63857 -12.45175 -12.38237 -11.65811 -11.43328 -11.22637 -10.98942 -10.55804 -10.37468 -10.13647 -8.51476 -8.22203 -6.30561 0.13364 0.19633 0.58423 1.38118 1.40201 1.52234 1.56897 2.39888 2.83369 3.13312 3.59125 3.88309 3.98558 4.07640 4.11482 4.21672 4.44945 4.55456 4.81422 4.83051 4.87679 4.93353 5.10748 5.15712 5.36005 5.46888 5.71891 5.75291 6.15298 6.81718 7.02000 7.37763 8.89588 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.007057 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.112650 B = 3966.571990 C = 4279.866086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 H 0.085 0.915 4 C 0.045 3.955 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.280 1.280 13 S -0.109 6.109 14 C -0.053 4.053 15 C -0.200 4.200 16 C 0.114 3.886 17 N -0.517 5.517 18 C 0.114 3.886 19 C -0.170 4.170 20 H 0.068 0.932 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.020 0.980 24 H 0.001 0.999 25 H 0.263 0.737 26 H 0.141 0.859 27 H 0.182 0.818 28 H 0.189 0.811 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 5.469 -12.422 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 H 0.104 0.896 4 C 0.007 3.993 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.206 1.206 13 S 0.137 5.863 14 C -0.175 4.175 15 C -0.227 4.227 16 C -0.043 4.043 17 N -0.228 5.228 18 C -0.043 4.043 19 C -0.197 4.197 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.038 0.962 24 H 0.019 0.981 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.199 0.801 28 H 0.206 0.794 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.757 4.830 -12.864 14.541 hybrid contribution 0.619 0.315 1.386 1.550 sum -4.138 5.145 -11.478 13.242 Atomic orbital electron populations 1.22095 0.91969 1.03022 1.02791 1.23512 0.98890 1.01399 0.94651 0.89636 1.18840 0.95507 0.94464 0.90522 1.21583 0.92881 1.34259 1.08065 0.92052 1.25814 1.03151 0.94892 0.95327 1.70068 1.37404 1.36792 1.12817 0.85522 0.80162 0.77954 0.78227 1.18912 1.20342 1.20623 1.86047 1.73500 1.28661 0.98119 1.22767 0.98532 0.97833 0.98368 1.22367 1.03867 0.94251 1.02203 1.23025 0.94451 0.99829 0.87040 1.67805 1.14865 1.18119 1.22055 1.23132 0.92331 0.88186 1.00689 1.22003 1.03919 1.02823 0.90930 0.91311 0.92252 0.90487 0.96223 0.98068 0.92762 0.84166 0.80070 0.79419 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.73 71.98 0.63 -3.74 15 2 C -0.06 -2.16 1.99 30.59 0.06 -2.10 15 3 H 0.09 3.23 6.91 -2.39 -0.02 3.22 15 4 C 0.04 2.23 4.45 29.85 0.13 2.36 15 5 C -0.53 -28.93 8.53 25.60 0.22 -28.72 15 6 H 0.06 3.31 7.60 -2.91 -0.02 3.29 15 7 C 0.01 0.35 5.46 84.65 0.46 0.81 15 8 N -0.93 -55.07 13.29 21.45 0.28 -54.79 15 9 Si 0.96 43.97 29.54 68.60 2.03 46.00 15 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 13 S -0.11 -4.11 20.66 -56.49 -1.17 -5.28 15 14 C -0.05 -1.66 6.00 22.90 0.14 -1.52 15 15 C -0.20 -5.57 8.10 22.50 0.18 -5.39 15 16 C 0.11 2.79 11.17 84.57 0.94 3.73 15 17 N -0.52 -13.36 10.36 -196.19 -2.03 -15.40 15 18 C 0.11 2.65 11.17 84.58 0.94 3.59 15 19 C -0.17 -4.49 9.90 22.50 0.22 -4.27 15 20 H 0.07 1.88 6.10 -2.39 -0.01 1.86 15 21 H 0.06 1.90 8.14 -2.39 -0.02 1.89 15 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 26 H 0.14 3.76 5.21 -2.91 -0.02 3.74 15 27 H 0.18 3.22 8.06 -2.91 -0.02 3.20 15 28 H 0.19 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -63.01 261.53 4.18 -58.83 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.13 Total: 5.88 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 3.93 Total: -35.24 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.75 Total: -70.18 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.17 Total: -5.28 kcal Total: -63.01 4.18 -58.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.033 kcal (2) G-P(sol) polarization free energy of solvation -63.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds