Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21683 * 120.00206 * 359.72112 * 13 12 11 15 15 C 1.46761 * 119.99760 * 179.72436 * 13 12 11 16 16 C 1.36666 * 126.84572 * 179.68409 * 15 13 12 17 17 N 1.33320 * 107.78676 * 179.89788 * 16 15 13 18 18 C 1.30860 * 109.68311 * 0.37381 * 17 16 15 19 19 N 1.34486 * 109.16735 * 359.76712 * 18 17 16 20 20 H 0.97001 * 126.47500 * 179.97438 * 19 18 17 21 21 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 23 23 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 24 24 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 25 25 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 26 26 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 27 27 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 28 28 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 29 29 H 1.07993 * 126.10807 * 359.97438 * 16 15 13 30 30 H 1.08001 * 125.41564 * 179.74571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7869 -7.5936 -0.0087 15 6 2.9370 -8.4867 -0.0150 16 6 2.6384 -9.8203 -0.0156 17 7 3.7881 -10.4951 -0.0247 18 6 4.7920 -9.6556 -0.0218 19 7 4.3157 -8.3979 -0.0158 20 1 4.8410 -7.5824 -0.0122 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.8714 -3.6047 0.8890 25 1 2.8727 -3.6038 -0.8910 26 1 0.8541 -5.0447 -0.8923 27 1 0.8534 -5.0450 0.8877 28 1 3.3862 -5.9232 -0.0026 29 1 1.6479 -10.2507 -0.0110 30 1 5.8367 -9.9293 -0.0235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609147379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = -21.943898 kcal Electronic energy + Delta-G solvation = -14168.086211 eV Core-core repulsion = 11576.648060 eV Total energy + Delta-G solvation = -2591.438152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.14879 -40.43335 -37.05400 -35.30244 -33.86270 -32.92019 -30.93607 -28.59734 -25.52232 -23.86535 -22.44737 -22.27520 -21.50994 -19.94768 -18.52719 -17.29400 -16.93389 -16.86418 -16.44760 -16.06913 -15.18621 -15.07419 -14.99601 -14.52565 -14.26883 -13.78802 -13.54517 -12.72819 -12.58295 -12.44061 -11.76704 -11.70217 -11.47603 -11.27464 -11.20040 -11.00053 -10.55433 -10.32243 -9.67748 -8.19997 -6.31836 0.24587 1.41793 1.44482 1.52426 1.85113 1.85803 2.13893 2.25907 2.42052 3.13974 3.62487 3.88484 4.08238 4.17896 4.29124 4.45198 4.50958 4.74224 4.91050 4.91575 5.14259 5.29511 5.45424 5.50273 5.68993 5.83106 6.20429 6.30560 6.41752 6.85698 6.89546 7.02915 7.38061 8.91893 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.066924 B = 0.004232 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.282916 B = 6614.231326 C = 7006.757338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.589 3.411 14 O -0.574 6.574 15 C -0.101 4.101 16 C 0.055 3.945 17 N -0.538 5.538 18 C 0.241 3.759 19 N -0.539 5.539 20 H 0.441 0.559 21 H 0.263 0.737 22 H -0.007 1.007 23 H -0.007 1.007 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.411 0.589 29 H 0.177 0.823 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -14.878 -0.015 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.360 5.360 13 C 0.377 3.623 14 O -0.453 6.453 15 C -0.218 4.218 16 C -0.099 4.099 17 N -0.257 5.257 18 C -0.043 4.043 19 N -0.146 5.146 20 H 0.283 0.717 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.248 0.752 29 H 0.194 0.806 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 12.932 -15.723 -0.020 20.358 hybrid contribution 0.261 2.299 0.003 2.313 sum 13.193 -13.424 -0.017 18.822 Atomic orbital electron populations 1.70101 1.07980 1.27891 1.51571 1.26022 0.95719 1.03571 0.94761 0.85474 0.78187 0.77938 0.79278 1.18984 1.21300 1.18991 1.21656 0.93785 0.91977 1.50635 0.91404 1.18951 0.94492 0.92954 0.95168 1.21601 0.98468 0.91554 1.02276 1.21327 0.91863 0.85112 1.01197 1.45803 1.11042 1.04792 1.74401 1.17206 0.87035 0.82129 0.75965 1.90837 1.17081 1.84948 1.52480 1.20825 0.84081 0.96054 1.20837 1.22753 0.98545 0.88635 0.99944 1.70266 0.98498 1.34584 1.22371 1.26189 1.01838 0.78172 0.98110 1.43341 1.05070 1.11526 1.54621 0.71686 0.92807 0.98902 0.98905 0.91155 0.91155 0.92780 0.92753 0.75220 0.80601 0.71871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.12 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 N -0.71 -18.22 5.55 -466.99 -2.59 -20.81 16 13 C 0.59 17.17 7.79 86.47 0.67 17.84 16 14 O -0.57 -21.97 16.90 -4.29 -0.07 -22.04 16 15 C -0.10 -2.29 7.08 40.01 0.28 -2.00 16 16 C 0.06 1.34 11.66 84.10 0.98 2.32 16 17 N -0.54 -11.35 11.20 -199.57 -2.24 -13.59 16 18 C 0.24 2.85 13.01 180.33 2.35 5.20 16 19 N -0.54 -6.73 6.07 -188.04 -1.14 -7.87 16 20 H 0.44 2.26 8.32 -92.71 -0.77 1.49 16 21 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.41 7.23 7.72 -92.71 -0.72 6.51 16 29 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.27 0.12 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -75.62 270.94 1.72 -73.89 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -0.32 Total: 4.79 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.78 Total: -3.06 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -5.69 Total: -98.47 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.04 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.62 1.72 -73.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609147379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.948 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds