Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35668 * 116.99703 * 2 1 4 4 C 1.39484 * 120.00625 * 179.97438 * 3 2 1 5 5 N 1.31971 * 120.13453 * 179.97438 * 4 3 2 6 6 C 1.32161 * 120.15594 * 359.97438 * 5 4 3 7 7 C 1.39350 * 120.00871 * 359.97438 * 6 5 4 8 8 C 1.47963 * 120.06247 * 180.02562 * 7 6 5 9 9 O 1.21573 * 120.00181 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99543 * 179.97438 * 8 7 6 11 11 C 1.36776 * 119.99889 * 179.72220 * 10 8 7 12 12 H 1.08002 * 119.99555 * 0.27746 * 11 10 8 13 13 C 1.39107 * 120.00445 * 180.27622 * 11 10 8 14 14 N 1.31324 * 119.99681 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00268 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47327 * 60.00199 * 15 13 11 17 17 H 1.48502 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47081 * 300.00028 * 15 13 11 19 19 N 1.32171 * 120.00807 * 0.24607 * 3 2 1 20 20 H 1.09000 * 109.47646 * 300.00512 * 1 2 3 21 21 H 1.09001 * 109.47248 * 60.00619 * 1 2 3 22 22 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.93054 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.99501 * 179.97438 * 6 5 4 25 25 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 26 26 H 0.96999 * 119.99916 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4377 1.2821 0.0005 5 7 4.0395 2.4566 0.0000 6 6 3.3251 3.5685 -0.0015 7 6 1.9332 3.5027 -0.0031 8 6 1.1322 4.7468 -0.0054 9 8 1.6884 5.8278 -0.0054 10 7 -0.2140 4.6815 -0.0075 11 6 -0.9544 5.8315 -0.0039 12 1 -0.4603 6.7918 -0.0039 13 6 -2.3438 5.7642 -0.0002 14 7 -2.9446 4.5964 0.0002 15 14 -3.3550 7.3348 0.0040 16 1 -3.0377 8.1311 -1.2085 17 1 -4.8002 6.9931 0.0081 18 1 -3.0311 8.1287 1.2164 19 7 1.3251 2.3174 0.0049 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 4.0250 0.3757 0.0005 24 1 3.8202 4.5284 -0.0015 25 1 -0.6578 3.8189 -0.0071 26 1 -3.9135 4.5495 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616292466.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = -49.746538 kcal Electronic energy + Delta-G solvation = -14651.106869 eV Core-core repulsion = 11922.630010 eV Total energy + Delta-G solvation = -2728.476859 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.074 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.38461 -40.12824 -39.18527 -36.22388 -35.25848 -33.37814 -32.11747 -28.63862 -27.67880 -25.80703 -24.66220 -22.01164 -20.32448 -19.31313 -19.11270 -17.80894 -17.34989 -17.33757 -16.79137 -15.90063 -15.81710 -15.46670 -14.91950 -14.72854 -13.95645 -13.64272 -13.10668 -12.99873 -12.68687 -12.59774 -12.52723 -12.13823 -11.98930 -11.62436 -11.13540 -10.23090 -10.22354 -9.82471 -8.64887 -6.07826 -0.61903 -0.00837 1.38813 1.41190 1.53137 1.85973 1.87599 2.20137 2.63518 2.67428 3.04806 3.18065 3.35315 3.44900 4.14927 4.24786 4.39253 4.42765 4.47552 4.75617 5.03636 5.26122 5.75688 5.90870 6.01636 6.37131 6.58970 6.90210 7.30978 7.86576 8.50844 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.035015 B = 0.008052 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.470532 B = 3476.467022 C = 4260.786923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.295 6.295 3 C 0.268 3.732 4 C 0.062 3.938 5 N -0.408 5.408 6 C 0.048 3.952 7 C 0.087 3.913 8 C 0.460 3.540 9 O -0.623 6.623 10 N -0.523 5.523 11 C -0.338 4.338 12 H 0.094 0.906 13 C -0.005 4.005 14 N -0.898 5.898 15 Si 1.006 2.994 16 H -0.266 1.266 17 H -0.266 1.266 18 H -0.266 1.266 19 N -0.502 5.502 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.138 0.862 23 H 0.221 0.779 24 H 0.183 0.817 25 H 0.403 0.597 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -9.619 -0.003 10.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.200 6.200 3 C 0.082 3.918 4 C -0.104 4.104 5 N -0.122 5.122 6 C -0.110 4.110 7 C -0.051 4.051 8 C 0.247 3.753 9 O -0.512 6.512 10 N -0.155 5.155 11 C -0.468 4.468 12 H 0.112 0.888 13 C -0.209 4.209 14 N -0.536 5.536 15 Si 0.827 3.173 16 H -0.191 1.191 17 H -0.190 1.190 18 H -0.191 1.191 19 N -0.235 5.235 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.156 0.844 23 H 0.237 0.763 24 H 0.200 0.800 25 H 0.238 0.762 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.355 -9.209 0.004 10.187 hybrid contribution -1.186 0.385 0.002 1.247 sum 3.169 -8.824 0.005 9.375 Atomic orbital electron populations 1.23134 0.75747 1.05265 1.02041 1.86248 1.24137 1.22237 1.87342 1.21336 0.91832 0.85390 0.93269 1.23721 0.89184 0.98414 0.99052 1.68621 1.37770 0.97779 1.08006 1.23494 0.90161 0.98944 0.98397 1.21893 0.93927 0.90810 0.98497 1.17638 0.82709 0.87387 0.87529 1.90584 1.71326 1.29226 1.60040 1.41903 1.04771 1.10069 1.58708 1.19977 0.89382 0.87590 1.49851 0.88781 1.26372 0.97353 1.02381 0.94759 1.69654 1.11936 1.25974 1.46000 0.84805 0.76646 0.76347 0.79489 1.19086 1.19039 1.19105 1.67999 1.40967 0.98557 1.15978 0.93144 0.93137 0.84422 0.76252 0.79963 0.76188 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.39 113.37 1.18 1.98 15 2 O -0.29 -7.85 10.49 -89.85 -0.94 -8.79 15 3 C 0.27 8.39 7.50 84.94 0.64 9.02 15 4 C 0.06 1.66 11.18 84.97 0.95 2.61 15 5 N -0.41 -12.75 10.48 -193.64 -2.03 -14.78 15 6 C 0.05 1.76 10.76 84.91 0.91 2.67 15 7 C 0.09 3.70 6.75 41.78 0.28 3.98 15 8 C 0.46 23.78 7.76 86.82 0.67 24.46 15 9 O -0.62 -35.20 15.91 -3.95 -0.06 -35.26 15 10 N -0.52 -28.22 5.27 -309.54 -1.63 -29.85 15 11 C -0.34 -19.01 9.68 84.13 0.81 -18.19 15 12 H 0.09 5.49 7.15 -2.91 -0.02 5.46 15 13 C -0.01 -0.27 5.50 84.98 0.47 0.19 15 14 N -0.90 -47.02 13.05 21.69 0.28 -46.74 15 15 Si 1.01 40.69 29.55 68.60 2.03 42.72 15 16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 17 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 19 N -0.50 -19.47 8.60 -297.50 -2.56 -22.03 15 20 H 0.05 1.37 8.11 -2.39 -0.02 1.35 15 21 H 0.05 1.37 8.11 -2.39 -0.02 1.35 15 22 H 0.14 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.22 3.72 8.06 -2.91 -0.02 3.70 15 24 H 0.18 6.52 7.64 -2.91 -0.02 6.50 15 25 H 0.40 21.33 7.24 -92.71 -0.67 20.66 15 26 H 0.29 13.81 8.31 -92.71 -0.77 13.04 15 Total: -1.00 -64.44 246.94 1.56 -62.89 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.55 Total: 25.12 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 5.92 Total: 26.72 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -5.94 Total: -113.40 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.01 Total: -44.05 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -64.44 1.56 -62.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616292466.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.140 kcal (2) G-P(sol) polarization free energy of solvation -64.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds