Wall clock time and date at job start Sun Mar 29 2020 22:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34516 * 125.78754 * 2 1 4 4 C 1.41376 * 106.84089 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.84242 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.79319 * 179.73499 * 5 4 3 7 7 H 1.08998 * 109.47371 * 340.00083 * 6 5 4 8 8 C 1.53002 * 109.47388 * 100.00077 * 6 5 4 9 9 N 1.46904 * 109.47587 * 219.99981 * 6 5 4 10 10 C 1.46894 * 111.00241 * 154.99933 * 9 6 5 11 11 C 1.53000 * 109.47122 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.46917 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00313 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99731 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00201 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46881 * 90.00245 * 16 14 12 18 18 H 1.48504 * 109.47158 * 209.99938 * 16 14 12 19 19 H 1.48502 * 109.47145 * 330.00389 * 16 14 12 20 20 O 1.34298 * 125.79175 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47056 * 89.99861 * 1 2 3 22 22 H 1.09000 * 109.46884 * 209.99804 * 1 2 3 23 23 H 1.09003 * 109.47129 * 329.99652 * 1 2 3 24 24 H 1.08004 * 126.58023 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.58211 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.47797 * 180.02562 * 8 6 5 27 27 H 1.09008 * 109.46694 * 300.00358 * 8 6 5 28 28 H 1.09001 * 109.47318 * 59.99489 * 8 6 5 29 29 H 1.00900 * 110.99178 * 31.04532 * 9 6 5 30 30 H 1.09005 * 109.47076 * 299.99976 * 10 9 6 31 31 H 1.08998 * 109.47210 * 60.00235 * 10 9 6 32 32 H 1.09005 * 109.46780 * 299.99735 * 11 10 9 33 33 H 1.08998 * 109.47232 * 59.99825 * 11 10 9 34 34 H 0.96992 * 119.99699 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6322 -0.0006 5 6 3.5815 -0.7121 -0.0015 6 6 4.7706 -1.6377 -0.0081 7 1 5.6488 -1.0986 -0.3633 8 6 5.0261 -2.1499 1.4109 9 7 4.5011 -2.7750 -0.8980 10 6 5.7521 -3.3577 -1.4012 11 6 5.4313 -4.5362 -2.3227 12 6 6.7148 -5.1344 -2.8385 13 1 7.6643 -4.7157 -2.5393 14 6 6.6768 -6.2163 -3.6923 15 7 5.5206 -6.7259 -4.0571 16 14 8.2677 -6.9574 -4.3323 17 1 8.7265 -8.0217 -3.4038 18 1 8.0358 -7.5407 -5.6781 19 1 9.3053 -5.8989 -4.4235 20 8 2.2925 -1.0894 -0.0005 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.9666 2.1205 0.0004 25 1 4.5212 1.2434 -0.0004 26 1 5.8865 -2.8191 1.4063 27 1 5.2261 -1.3060 2.0712 28 1 4.1479 -2.6890 1.7662 29 1 3.8969 -2.5033 -1.6590 30 1 6.3068 -2.6022 -1.9578 31 1 6.3542 -3.7058 -0.5620 32 1 4.8765 -5.2918 -1.7665 33 1 4.8294 -4.1878 -3.1620 34 1 5.4939 -7.4868 -4.6581 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037979135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:50 Heat of formation + Delta-G solvation = -2.855110 kcal Electronic energy + Delta-G solvation = -14749.672725 eV Core-core repulsion = 12262.602668 eV Total energy + Delta-G solvation = -2487.070057 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.50467 -36.73292 -33.43004 -33.08539 -31.97282 -30.53686 -28.04007 -26.39672 -24.17491 -21.84583 -21.61375 -20.43687 -19.81340 -16.74880 -16.23496 -16.08772 -15.15134 -14.65605 -14.35312 -13.94316 -13.36997 -13.20984 -12.95849 -12.72901 -12.70593 -12.24347 -12.13147 -11.88656 -11.49146 -11.24150 -11.02680 -10.84699 -10.53383 -9.98967 -9.80354 -9.40216 -9.14311 -8.34469 -8.20410 -7.88859 -5.98527 -4.01382 1.79265 2.65006 2.97807 3.33110 3.39078 3.42178 4.41455 4.57247 4.70683 4.95533 5.07374 5.25603 5.35082 5.37381 5.43147 5.49160 5.60041 5.81813 5.86800 6.01494 6.04602 6.21131 6.30952 6.35828 6.46103 6.57825 6.97287 7.24744 7.47032 7.72622 7.81030 7.93533 8.08754 8.43715 9.05849 9.62357 11.12940 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047678 B = 0.004845 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.136550 B = 5777.210627 C = 6078.535447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.215 4.215 4 C -0.215 4.215 5 C 0.001 3.999 6 C 0.162 3.838 7 H 0.068 0.932 8 C -0.137 4.137 9 N -0.684 5.684 10 C 0.064 3.936 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.157 6.157 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.341 0.659 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 14.443 8.923 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.234 4.234 4 C -0.235 4.235 5 C -0.051 4.051 6 C 0.052 3.948 7 H 0.086 0.914 8 C -0.195 4.195 9 N -0.316 5.316 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.053 6.053 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.163 0.837 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.899 13.545 9.329 17.835 hybrid contribution 1.214 0.488 -1.087 1.701 sum -5.684 14.032 8.242 17.238 Atomic orbital electron populations 1.20268 0.85366 1.03766 1.03442 1.22468 0.94091 0.84464 1.06212 1.21487 0.92695 0.99147 1.10087 1.21531 0.98158 0.93786 1.10007 1.22657 0.83268 0.94180 1.04949 1.20163 0.89347 0.89024 0.96306 0.91398 1.21812 1.02885 1.00801 0.94020 1.60707 1.18156 1.29223 1.23492 1.22262 0.88589 0.97444 0.98052 1.19068 0.96948 0.91836 0.93374 1.21167 0.92698 1.14258 1.27950 0.92721 1.25005 0.96132 0.96846 0.96362 1.69979 1.24186 1.24193 1.34860 0.86583 0.83720 0.79402 0.78209 1.20617 1.21225 1.19919 1.84045 1.16097 1.34463 1.70700 0.90187 0.90543 0.89689 0.83827 0.83747 0.91442 0.92774 0.91720 0.84056 0.96439 0.91996 0.95539 0.96782 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.42 36.01 0.38 -0.26 16 2 C -0.02 -0.28 7.32 -35.62 -0.26 -0.54 16 3 C -0.21 -2.67 10.81 -39.70 -0.43 -3.10 16 4 C -0.22 -2.91 10.80 -39.71 -0.43 -3.34 16 5 C 0.00 0.01 5.81 -35.63 -0.21 -0.20 16 6 C 0.16 2.53 3.07 -68.86 -0.21 2.31 16 7 H 0.07 1.01 7.79 -51.93 -0.40 0.60 16 8 C -0.14 -1.95 9.40 37.16 0.35 -1.60 16 9 N -0.68 -12.90 6.30 -107.95 -0.68 -13.58 16 10 C 0.06 1.37 5.42 -3.83 -0.02 1.35 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 O -0.16 -2.51 10.64 5.72 0.06 -2.45 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 25 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 26 H 0.07 0.97 7.45 -51.93 -0.39 0.58 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.34 6.53 8.35 -39.29 -0.33 6.20 16 30 H 0.02 0.36 8.06 -51.93 -0.42 -0.05 16 31 H 0.06 1.30 7.44 -51.93 -0.39 0.91 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -31.38 292.18 -7.16 -38.54 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.27 Total: 1.33 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.39 Total: -18.54 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.06 Total: -40.07 kcal Atomic # 8 Polarization: -2.51 SS G_CDS: 0.06 Total: -2.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.38 -7.16 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds