Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47552 * 2 1 4 4 C 1.50693 * 109.47108 * 120.00316 * 2 1 3 5 5 C 1.38223 * 120.01655 * 15.92686 * 4 2 1 6 6 C 1.38221 * 120.02831 * 179.72383 * 5 4 2 7 7 C 1.38267 * 120.04847 * 0.54436 * 6 5 4 8 8 C 1.38174 * 120.02784 * 359.72704 * 7 6 5 9 9 C 1.38437 * 120.01223 * 196.19254 * 4 2 1 10 10 F 1.35101 * 120.02696 * 0.02969 * 9 4 2 11 11 N 1.46500 * 109.46920 * 240.00201 * 2 1 3 12 12 C 1.46501 * 119.99904 * 303.58222 * 11 2 1 13 13 C 1.36936 * 120.00363 * 123.57679 * 11 2 1 14 14 H 1.08001 * 119.99695 * 8.70083 * 13 11 2 15 15 C 1.38809 * 120.00435 * 188.41734 * 13 11 2 16 16 N 1.31626 * 119.99903 * 354.53004 * 15 13 11 17 17 Si 1.86803 * 120.00144 * 174.52908 * 15 13 11 18 18 H 1.48501 * 109.46708 * 94.99303 * 17 15 13 19 19 H 1.48500 * 109.47063 * 214.99180 * 17 15 13 20 20 H 1.48501 * 109.46856 * 334.99713 * 17 15 13 21 21 H 1.08998 * 109.47024 * 300.00088 * 1 2 3 22 22 H 1.09000 * 109.47147 * 59.99466 * 1 2 3 23 23 H 1.09002 * 109.47552 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.97898 * 359.97438 * 5 4 2 25 25 H 1.07994 * 119.97186 * 180.27293 * 6 5 4 26 26 H 1.08003 * 119.98654 * 179.74173 * 7 6 5 27 27 H 1.07997 * 120.01424 * 180.02562 * 8 7 6 28 28 H 1.09005 * 109.46987 * 236.01145 * 12 11 2 29 29 H 1.09001 * 109.47306 * 356.01454 * 12 11 2 30 30 H 1.08999 * 109.47387 * 116.01713 * 12 11 2 31 31 H 0.96999 * 119.99477 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.1777 -1.5127 1.9629 6 6 1.6397 -2.1690 3.0883 7 6 2.9540 -2.0149 3.4889 8 6 3.8087 -1.2091 2.7614 9 6 3.3485 -0.5555 1.6306 10 9 4.1832 0.2331 0.9188 11 7 2.0183 -0.6906 -1.1962 12 6 1.6008 -2.0682 -1.4684 13 6 2.8648 -0.0484 -2.0600 14 1 3.2840 0.9103 -1.7924 15 6 3.1889 -0.6323 -3.2769 16 7 2.7704 -1.8488 -3.5553 17 14 4.2191 0.3083 -4.5193 18 1 5.6476 -0.0657 -4.3621 19 1 3.7674 -0.0289 -5.8932 20 1 4.0611 1.7670 -4.2901 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.1496 -1.6299 1.6535 25 1 0.9723 -2.7990 3.6574 26 1 3.3128 -2.5249 4.3708 27 1 4.8354 -1.0892 3.0744 28 1 2.4822 -2.7006 -1.5754 29 1 0.9901 -2.4327 -0.6424 30 1 1.0195 -2.0964 -2.3900 31 1 2.9965 -2.2566 -4.4059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058000519.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -7.516804 kcal Electronic energy + Delta-G solvation = -15536.241355 eV Core-core repulsion = 12925.508847 eV Total energy + Delta-G solvation = -2610.732508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.68475 -40.16565 -37.70978 -34.53727 -31.85645 -31.20664 -29.68972 -28.12683 -25.75773 -23.69471 -23.19248 -20.91673 -18.94093 -18.45871 -17.19872 -17.09310 -16.58168 -16.31248 -15.64577 -15.11843 -14.92161 -14.61373 -14.23921 -13.83628 -13.46854 -13.03437 -12.81775 -12.77006 -12.69615 -12.64570 -12.26841 -12.12519 -11.80733 -11.71593 -11.58290 -10.64558 -9.80506 -9.47892 -8.93271 -7.74811 -5.18264 0.36207 0.40174 1.43045 1.43897 1.53628 2.48510 2.79039 3.32657 3.55422 3.75633 3.90444 3.93375 4.20320 4.39619 4.48646 4.55549 4.63795 4.77958 4.97521 5.09327 5.14333 5.25224 5.28137 5.43473 5.53151 5.56518 5.62898 5.67155 5.85077 6.12453 6.30889 7.17896 7.89995 8.27701 9.22965 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.009540 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.700546 B = 2934.355718 C = 3249.953177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 H 0.053 0.947 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.096 4.096 8 C -0.168 4.168 9 C 0.072 3.928 10 F -0.158 7.158 11 N -0.610 5.610 12 C 0.195 3.805 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.063 4.063 16 N -0.946 5.946 17 Si 0.969 3.031 18 H -0.292 1.292 19 H -0.290 1.290 20 H -0.271 1.271 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.147 0.853 25 H 0.162 0.838 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.001 0.999 29 H 0.024 0.976 30 H 0.018 0.982 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -0.184 14.507 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.094 3.906 3 H 0.071 0.929 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.145 4.145 7 C -0.114 4.114 8 C -0.186 4.186 9 C 0.053 3.947 10 F -0.136 7.136 11 N -0.333 5.333 12 C 0.051 3.949 13 C -0.374 4.374 14 H 0.086 0.914 15 C -0.256 4.256 16 N -0.595 5.595 17 Si 0.798 3.202 18 H -0.219 1.219 19 H -0.216 1.216 20 H -0.196 1.196 21 H 0.098 0.902 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.164 0.836 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.160 0.840 28 H 0.019 0.981 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.519 -0.218 14.300 14.728 hybrid contribution 1.119 0.564 -1.358 1.847 sum -2.400 0.346 12.942 13.167 Atomic orbital electron populations 1.22178 0.94581 1.02095 1.01684 1.19349 0.94396 0.93861 0.82988 0.92871 1.20973 0.93165 1.01606 0.98283 1.21333 1.00279 0.95153 0.94753 1.21593 0.96525 0.99728 0.96686 1.21348 0.93237 0.96879 0.99936 1.21382 1.02158 0.99997 0.95090 1.18153 0.88636 0.94997 0.92926 1.91438 1.71369 1.72493 1.78349 1.44283 1.54145 1.12117 1.22748 1.20558 0.95768 0.83641 0.94951 1.19611 1.19803 1.01760 0.96220 0.91388 1.25614 1.02513 0.97750 0.99683 1.70426 1.51464 1.14390 1.23250 0.85206 0.77907 0.78447 0.78680 1.21892 1.21611 1.19581 0.90182 0.93624 0.91984 0.83564 0.82053 0.81809 0.84038 0.98070 0.95720 0.96400 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 7.97 71.98 0.57 -4.41 16 2 C 0.20 8.51 2.58 44.24 0.11 8.62 16 3 H 0.05 2.39 7.71 -2.39 -0.02 2.37 16 4 C -0.14 -5.14 4.82 -19.82 -0.10 -5.23 16 5 C -0.10 -2.80 8.60 22.26 0.19 -2.61 16 6 C -0.13 -2.91 10.04 22.27 0.22 -2.69 16 7 C -0.10 -2.21 10.04 22.26 0.22 -1.98 16 8 C -0.17 -5.02 10.03 22.31 0.22 -4.79 16 9 C 0.07 2.81 7.25 22.38 0.16 2.98 16 10 F -0.16 -7.13 16.74 44.97 0.75 -6.38 16 11 N -0.61 -31.99 2.81 -706.99 -1.99 -33.98 16 12 C 0.20 10.21 8.13 127.77 1.04 11.25 16 13 C -0.24 -14.19 9.79 84.03 0.82 -13.37 16 14 H 0.07 3.93 7.69 -2.91 -0.02 3.91 16 15 C -0.06 -3.71 5.46 84.86 0.46 -3.25 16 16 N -0.95 -57.98 9.47 21.65 0.21 -57.78 16 17 Si 0.97 47.75 29.56 68.60 2.03 49.78 16 18 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 21 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.99 5.62 -2.39 -0.01 1.98 16 24 H 0.15 3.68 5.96 -2.91 -0.02 3.66 16 25 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 26 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.00 0.04 7.16 -2.38 -0.02 0.02 16 29 H 0.02 1.09 6.22 -2.39 -0.01 1.08 16 30 H 0.02 1.01 6.94 -2.39 -0.02 0.99 16 31 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -69.04 260.67 6.06 -62.98 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.12 Total: 0.86 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.94 Total: -15.49 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.78 Total: -91.75 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.75 Total: -6.38 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -69.04 6.06 -62.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058000519.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.466 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds