Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47109 * 2 1 4 4 C 1.50699 * 109.46867 * 239.99768 * 2 1 3 5 5 C 1.38216 * 120.01571 * 344.28856 * 4 2 1 6 6 C 1.38223 * 120.02894 * 180.02562 * 5 4 2 7 7 C 1.38271 * 120.04779 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.02637 * 359.70124 * 7 6 5 9 9 C 1.38441 * 120.01345 * 164.30798 * 4 2 1 10 10 F 1.35099 * 120.02448 * 359.95976 * 9 4 2 11 11 N 1.46503 * 109.47155 * 119.99921 * 2 1 3 12 12 C 1.46504 * 119.99856 * 62.01311 * 11 2 1 13 13 C 1.36932 * 120.00343 * 242.01102 * 11 2 1 14 14 H 1.08004 * 119.99848 * 22.41283 * 13 11 2 15 15 C 1.38807 * 120.00199 * 202.41737 * 13 11 2 16 16 N 1.31616 * 120.00289 * 13.39520 * 15 13 11 17 17 Si 1.86804 * 119.99977 * 193.39516 * 15 13 11 18 18 H 1.48495 * 109.46966 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46931 * 120.00022 * 17 15 13 20 20 H 1.48495 * 109.47087 * 239.99699 * 17 15 13 21 21 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46645 * 300.00040 * 1 2 3 23 23 H 1.08993 * 109.46921 * 59.99814 * 1 2 3 24 24 H 1.08002 * 119.98575 * 359.97438 * 5 4 2 25 25 H 1.07999 * 119.97774 * 180.02562 * 6 5 4 26 26 H 1.08001 * 119.98267 * 179.97438 * 7 6 5 27 27 H 1.07998 * 120.01016 * 180.27217 * 8 7 6 28 28 H 1.09000 * 109.47541 * 89.03004 * 12 11 2 29 29 H 1.08994 * 109.46911 * 209.03405 * 12 11 2 30 30 H 1.08999 * 109.46796 * 329.02974 * 12 11 2 31 31 H 0.97001 * 120.00349 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.1765 -1.5091 -1.9654 6 6 1.6371 -2.1613 -3.0938 7 6 2.9543 -2.0160 -3.4882 8 6 3.8102 -1.2137 -2.7582 9 6 3.3512 -0.5638 -1.6249 10 9 4.1885 0.2169 -0.9075 11 7 2.0184 -0.6906 1.1962 12 6 1.7012 -2.1054 1.4060 13 6 2.7713 -0.0138 2.1182 14 1 2.7130 1.0631 2.1773 15 6 3.6095 -0.7116 2.9768 16 7 3.8860 -1.9769 2.7425 17 14 4.3452 0.1451 4.4648 18 1 3.8828 1.5557 4.5027 19 1 3.9112 -0.5520 5.7021 20 1 5.8269 0.1127 4.3723 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.1477 -1.6242 -1.6575 25 1 0.9675 -2.7848 -3.6677 26 1 3.3131 -2.5264 -4.3698 27 1 4.8379 -1.0969 -3.0691 28 1 2.4691 -2.7230 0.9400 29 1 1.6654 -2.3151 2.4750 30 1 0.7330 -2.3308 0.9590 31 1 4.4714 -2.4647 3.3427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058000521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = -14.064627 kcal Electronic energy + Delta-G solvation = -15594.749505 eV Core-core repulsion = 12983.733062 eV Total energy + Delta-G solvation = -2611.016443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.64162 -40.13409 -37.66248 -34.50045 -31.93896 -31.19977 -29.69955 -28.04179 -25.78639 -23.75043 -23.17319 -20.91760 -18.85536 -18.43146 -17.16986 -17.10323 -16.51119 -16.30123 -15.68091 -15.14039 -14.87990 -14.65507 -14.26073 -13.77534 -13.53064 -13.07529 -12.86174 -12.79950 -12.70528 -12.58168 -12.35466 -12.09078 -11.90192 -11.66912 -11.52953 -10.63895 -9.79159 -9.44291 -8.78838 -7.84725 -5.29269 0.38723 0.41776 1.42761 1.43460 1.54259 2.48601 2.79939 3.30166 3.59744 3.75417 3.92862 3.95092 4.21497 4.41639 4.49842 4.56386 4.65349 4.79700 5.00553 5.11924 5.16581 5.25093 5.28722 5.33509 5.48123 5.58550 5.61404 5.67444 5.70126 6.14721 6.32749 7.14775 7.86126 8.29930 9.19834 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.009880 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.684205 B = 2833.454568 C = 3120.211485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.196 3.804 3 H 0.050 0.950 4 C -0.135 4.135 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.098 4.098 8 C -0.171 4.171 9 C 0.072 3.928 10 F -0.159 7.159 11 N -0.599 5.599 12 C 0.186 3.814 13 C -0.254 4.254 14 H 0.065 0.935 15 C -0.053 4.053 16 N -0.937 5.937 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.296 1.296 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.150 0.850 25 H 0.163 0.837 26 H 0.163 0.837 27 H 0.137 0.863 28 H -0.014 1.014 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -0.054 -12.182 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.089 3.911 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.115 4.115 6 C -0.146 4.146 7 C -0.116 4.116 8 C -0.190 4.190 9 C 0.053 3.947 10 F -0.137 7.137 11 N -0.321 5.321 12 C 0.042 3.958 13 C -0.384 4.384 14 H 0.083 0.917 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.223 1.223 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.167 0.833 25 H 0.181 0.819 26 H 0.181 0.819 27 H 0.155 0.845 28 H 0.004 0.996 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.169 -0.104 -12.024 13.514 hybrid contribution 1.272 0.469 1.304 1.881 sum -4.896 0.365 -10.720 11.791 Atomic orbital electron populations 1.22147 0.94299 1.02178 1.01856 1.19495 0.94654 0.94006 0.82916 0.93141 1.20965 0.92957 1.01667 0.98222 1.21333 1.00319 0.95210 0.94674 1.21588 0.96371 0.99825 0.96836 1.21323 0.93347 0.96954 0.99981 1.21364 1.02035 1.00322 0.95300 1.18198 0.88780 0.95133 0.92633 1.91443 1.71306 1.72906 1.78090 1.44234 1.59943 1.08472 1.19470 1.20385 0.93959 0.83574 0.97920 1.19539 1.17263 0.91488 1.10132 0.91713 1.25749 0.98539 0.97209 1.03324 1.70256 1.39617 1.10254 1.38301 0.85217 0.77332 0.78422 0.79607 1.19121 1.21345 1.22299 0.91804 0.93122 0.90339 0.83258 0.81949 0.81934 0.84492 0.99611 0.95712 0.94899 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.04 71.98 0.58 -4.20 16 2 C 0.20 8.35 2.64 44.24 0.12 8.47 16 3 H 0.05 2.31 7.79 -2.39 -0.02 2.29 16 4 C -0.13 -5.28 4.79 -19.82 -0.09 -5.38 16 5 C -0.10 -2.91 9.10 22.26 0.20 -2.71 16 6 C -0.13 -3.12 10.04 22.27 0.22 -2.90 16 7 C -0.10 -2.48 10.04 22.26 0.22 -2.25 16 8 C -0.17 -5.66 10.03 22.31 0.22 -5.44 16 9 C 0.07 3.02 7.25 22.37 0.16 3.19 16 10 F -0.16 -7.83 16.74 44.97 0.75 -7.08 16 11 N -0.60 -31.16 2.80 -706.98 -1.98 -33.15 16 12 C 0.19 9.54 8.30 127.77 1.06 10.60 16 13 C -0.25 -14.64 9.59 84.03 0.81 -13.84 16 14 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 15 C -0.05 -3.13 5.05 84.86 0.43 -2.71 16 16 N -0.94 -57.94 10.74 21.65 0.23 -57.71 16 17 Si 0.97 47.25 29.57 68.60 2.03 49.28 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 21 H 0.06 1.95 5.43 -2.39 -0.01 1.93 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 24 H 0.15 3.77 5.96 -2.91 -0.02 3.75 16 25 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 26 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 27 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 28 H -0.01 -0.83 7.70 -2.39 -0.02 -0.85 16 29 H 0.02 1.36 6.89 -2.39 -0.02 1.35 16 30 H 0.03 1.41 6.53 -2.39 -0.02 1.39 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.96 262.91 6.08 -63.88 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.12 Total: 1.93 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.93 Total: -17.16 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -1.75 Total: -90.85 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.75 Total: -7.08 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -69.96 6.08 -63.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058000521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.817 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds