Wall clock time and date at job start Sun Mar 29 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46469 * 2 1 4 4 C 1.36834 * 120.00158 * 261.04631 * 3 2 1 5 5 H 1.08006 * 120.00230 * 200.26878 * 4 3 2 6 6 C 1.39051 * 119.99911 * 20.26585 * 4 3 2 7 7 N 1.31363 * 119.99886 * 23.74472 * 6 4 3 8 8 Si 1.86806 * 120.00121 * 203.74073 * 6 4 3 9 9 H 1.48502 * 109.46705 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.46908 * 120.00038 * 8 6 4 11 11 H 1.48499 * 109.47157 * 240.00473 * 8 6 4 12 12 C 1.34775 * 119.99805 * 81.05698 * 3 2 1 13 13 O 1.21677 * 120.00228 * 179.58686 * 12 3 2 14 14 C 1.47022 * 120.00167 * 359.58119 * 12 3 2 15 15 C 1.38520 * 126.89753 * 351.80120 * 14 12 3 16 16 C 1.39639 * 105.35251 * 180.02562 * 15 14 12 17 17 N 1.30878 * 107.87852 * 0.02562 * 16 15 14 18 18 N 1.28437 * 110.95215 * 0.02562 * 17 16 15 19 19 C 1.46502 * 125.19273 * 179.73682 * 18 17 16 20 20 H 1.08998 * 109.47337 * 68.46308 * 1 2 3 21 21 H 1.09005 * 109.46511 * 188.46207 * 1 2 3 22 22 H 1.09006 * 109.47194 * 308.45434 * 1 2 3 23 23 H 1.08994 * 109.46883 * 240.00677 * 2 1 3 24 24 H 1.08992 * 109.47326 * 120.00042 * 2 1 3 25 25 H 0.97007 * 119.99667 * 179.97438 * 7 6 4 26 26 H 1.08004 * 127.32239 * 0.05183 * 15 14 12 27 27 H 1.08000 * 126.05774 * 179.97438 * 16 15 14 28 28 H 1.09001 * 109.46840 * 87.37699 * 19 18 17 29 29 H 1.09007 * 109.46854 * 207.37375 * 19 18 17 30 30 H 1.08997 * 109.47213 * 327.37553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.4201 1.9649 -1.1706 5 1 3.0693 2.8278 -1.1488 6 6 1.9927 1.4471 -2.3882 7 7 0.8868 0.7408 -2.4497 8 14 2.9911 1.7558 -3.9366 9 1 4.1849 2.5727 -3.6010 10 1 3.4259 0.4578 -4.5121 11 1 2.1564 2.4818 -4.9272 12 6 2.0717 2.0771 1.1530 13 8 2.4842 3.2218 1.1543 14 6 1.6314 1.4530 2.4093 15 6 0.9959 0.2306 2.5527 16 6 0.7854 0.0820 3.9251 17 7 1.2654 1.1430 4.5224 18 7 1.7652 1.9633 3.6698 19 6 2.3807 3.2516 3.9983 20 1 -0.3634 0.3772 -0.9559 21 1 -0.3632 -1.0166 0.1512 22 1 -0.3634 0.6391 0.8048 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.5884 0.3799 -3.2992 26 1 0.7219 -0.4608 1.7695 27 1 0.3099 -0.7590 4.4079 28 1 3.4380 3.1036 4.2182 29 1 2.2773 3.9301 3.1514 30 1 1.8848 3.6796 4.8694 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060393612.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:27 Heat of formation + Delta-G solvation = 81.725831 kcal Electronic energy + Delta-G solvation = -15757.761507 eV Core-core repulsion = 13170.818812 eV Total energy + Delta-G solvation = -2586.942695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86657 -38.38213 -35.40049 -32.88009 -32.05527 -30.39449 -29.19525 -26.53736 -25.21426 -22.52839 -21.66998 -21.01600 -18.97986 -17.06070 -16.29027 -15.76359 -15.51610 -14.73446 -14.18416 -13.85684 -13.65173 -13.41583 -12.69965 -12.34582 -12.06249 -11.90978 -11.51666 -11.28134 -11.15325 -10.88604 -10.45817 -10.34146 -10.00780 -9.84001 -9.10158 -8.62719 -8.54893 -8.19454 -7.80690 -6.46163 -3.95702 2.09611 3.08358 3.08584 3.19770 3.22334 3.27361 4.02493 4.21668 4.73896 5.00412 5.11305 5.49336 5.59017 5.65224 5.85970 6.06258 6.11883 6.24804 6.38721 6.49061 6.60144 6.74130 7.11124 7.15020 7.32732 7.37367 7.82138 7.97524 8.38302 8.67261 9.03957 9.25290 9.84787 10.49418 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.043367 B = 0.009427 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.493122 B = 2969.497657 C = 3493.957179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 N -0.408 5.408 4 C -0.307 4.307 5 H 0.105 0.895 6 C 0.036 3.964 7 N -0.852 5.852 8 Si 0.924 3.076 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.496 3.504 13 O -0.598 6.598 14 C 0.005 3.995 15 C -0.238 4.238 16 C -0.015 4.015 17 N -0.308 5.308 18 N -0.273 5.273 19 C 0.088 3.912 20 H 0.114 0.886 21 H 0.038 0.962 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.270 0.730 26 H 0.186 0.814 27 H 0.176 0.824 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -3.045 5.256 6.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 N -0.123 5.123 4 C -0.435 4.435 5 H 0.123 0.877 6 C -0.169 4.169 7 N -0.490 5.490 8 Si 0.750 3.250 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.285 3.715 13 O -0.486 6.486 14 C -0.124 4.124 15 C -0.266 4.266 16 C -0.192 4.192 17 N -0.140 5.140 18 N -0.061 5.061 19 C -0.052 4.052 20 H 0.132 0.868 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.203 0.797 27 H 0.193 0.807 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.160 -1.964 6.171 6.478 hybrid contribution 0.143 -0.441 -1.436 1.509 sum 0.303 -2.405 4.734 5.319 Atomic orbital electron populations 1.22606 0.95997 0.99343 1.05575 1.21806 0.95148 0.83511 1.01042 1.43462 1.52626 1.10636 1.05606 1.19755 1.27083 1.15049 0.81589 0.87686 1.25370 0.95167 0.96912 0.99443 1.69911 1.17786 1.34512 1.26778 0.85909 0.80133 0.78339 0.80631 1.19054 1.20400 1.20636 1.16693 0.86653 0.85710 0.82455 1.90559 1.53854 1.17988 1.86165 1.21953 1.06359 0.96183 0.87891 1.23468 1.06810 0.98455 0.97855 1.23462 1.05007 0.97780 0.92926 1.73014 1.15957 1.02875 1.22113 1.45463 1.41738 1.15929 1.02921 1.22251 0.97668 0.81062 1.04246 0.86822 0.94291 0.93984 0.89830 0.92399 0.91914 0.79748 0.80658 0.90798 0.86541 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 8.07 37.16 0.30 -3.33 16 2 C 0.11 2.36 4.79 -4.04 -0.02 2.34 16 3 N -0.41 -10.32 2.63 -116.18 -0.31 -10.62 16 4 C -0.31 -8.22 9.25 -15.02 -0.14 -8.35 16 5 H 0.11 2.96 7.44 -52.48 -0.39 2.57 16 6 C 0.04 0.91 4.76 -17.45 -0.08 0.82 16 7 N -0.85 -20.92 8.75 55.50 0.49 -20.44 16 8 Si 0.92 19.50 29.62 -169.99 -5.03 14.46 16 9 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 C 0.50 12.56 7.47 -12.70 -0.09 12.46 16 13 O -0.60 -16.35 14.29 5.21 0.07 -16.28 16 14 C 0.00 0.11 6.64 -82.06 -0.54 -0.44 16 15 C -0.24 -4.55 7.37 -38.95 -0.29 -4.84 16 16 C -0.01 -0.26 12.03 -17.44 -0.21 -0.47 16 17 N -0.31 -5.87 11.90 30.58 0.36 -5.51 16 18 N -0.27 -5.49 3.75 -63.88 -0.24 -5.72 16 19 C 0.09 1.47 10.99 59.85 0.66 2.12 16 20 H 0.11 2.63 5.50 -51.93 -0.29 2.35 16 21 H 0.04 0.66 8.04 -51.93 -0.42 0.25 16 22 H 0.04 0.87 6.11 -51.93 -0.32 0.56 16 23 H 0.08 1.90 6.50 -51.93 -0.34 1.56 16 24 H 0.06 1.14 5.08 -51.93 -0.26 0.88 16 25 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 26 H 0.19 3.30 3.29 -52.48 -0.17 3.12 16 27 H 0.18 2.32 8.06 -52.49 -0.42 1.89 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.12 2.15 6.03 -51.93 -0.31 1.83 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 244.27 15.07 3.68 3.68 Total: -1.00 -29.70 244.27 -4.30 -33.99 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -2.90 Total: 6.12 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.42 Total: 0.32 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.30 Total: -42.29 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.07 Total: -16.28 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.70 -4.30 -33.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060393612.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.721 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds