Wall clock time and date at job start Sun Mar 29 2020 21:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47370 * 2 1 4 4 H 1.08999 * 109.46669 * 305.26482 * 3 2 1 5 5 C 1.50696 * 109.47065 * 185.26288 * 3 2 1 6 6 H 1.08003 * 120.00282 * 245.24808 * 5 3 2 7 7 C 1.37885 * 119.99887 * 64.97584 * 5 3 2 8 8 N 1.31505 * 120.00208 * 6.91523 * 7 5 3 9 9 Si 1.86800 * 119.99791 * 186.91647 * 7 5 3 10 10 H 1.48502 * 109.47166 * 93.76974 * 9 7 5 11 11 H 1.48497 * 109.47077 * 213.77146 * 9 7 5 12 12 H 1.48500 * 109.47364 * 333.77174 * 9 7 5 13 13 N 1.46500 * 109.46742 * 65.26231 * 3 2 1 14 14 C 1.34773 * 119.99772 * 274.99591 * 13 3 2 15 15 O 1.21568 * 120.00689 * 0.02562 * 14 13 3 16 16 C 1.47709 * 119.99648 * 180.02562 * 14 13 3 17 17 C 1.41505 * 126.51982 * 179.97438 * 16 14 13 18 18 C 1.35364 * 105.50542 * 179.97438 * 17 16 14 19 19 N 1.35035 * 107.22932 * 0.02562 * 18 17 16 20 20 H 0.96993 * 124.88588 * 180.02562 * 19 18 17 21 21 N 1.28470 * 110.22713 * 359.74307 * 19 18 17 22 22 H 1.08992 * 109.47104 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46698 * 300.00044 * 1 2 3 24 24 H 1.08997 * 109.46753 * 59.99454 * 1 2 3 25 25 H 1.09004 * 109.46698 * 239.99956 * 2 1 3 26 26 H 1.08998 * 109.47224 * 120.00789 * 2 1 3 27 27 H 0.96995 * 120.00560 * 179.97438 * 8 7 5 28 28 H 0.96998 * 119.99755 * 95.00768 * 13 3 2 29 29 H 1.07999 * 127.24855 * 0.02562 * 17 16 14 30 30 H 1.07997 * 126.38562 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1303 6 1 4.1535 1.8106 0.6807 7 6 4.1340 0.9735 -1.2829 8 7 3.3917 0.6503 -2.3191 9 14 5.9912 0.7946 -1.3722 10 1 6.3735 -0.5915 -1.0008 11 1 6.4501 1.0809 -2.7552 12 1 6.6266 1.7521 -0.4316 13 7 1.6579 2.0955 1.2545 14 6 0.4412 2.6623 1.3757 15 8 -0.3394 2.6313 0.4443 16 6 0.0561 3.3212 2.6404 17 6 -1.1775 3.9566 2.9172 18 6 -1.0743 4.4089 4.1889 19 7 0.1506 4.0615 4.6387 20 1 0.4934 4.2602 5.5240 21 7 0.7944 3.4247 3.7274 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8085 0.3194 -3.1300 28 1 2.2807 2.1201 1.9978 29 1 -2.0237 4.0585 2.2538 30 1 -1.8303 4.9478 4.7405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062777526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:30 Heat of formation + Delta-G solvation = 4.754908 kcal Electronic energy + Delta-G solvation = -15107.059471 eV Core-core repulsion = 12516.779067 eV Total energy + Delta-G solvation = -2590.280405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.48827 -40.39128 -36.90249 -34.32311 -33.26680 -32.32543 -31.49679 -28.97112 -25.62104 -24.38762 -22.56756 -21.73016 -20.93603 -19.45132 -18.73266 -17.41440 -17.17810 -16.70579 -16.08795 -15.77138 -14.95684 -14.63938 -14.54518 -14.08998 -13.75541 -13.43956 -13.25254 -12.90998 -12.63378 -12.19065 -12.09494 -11.88168 -11.63219 -11.08153 -10.92747 -10.54172 -10.36339 -10.09230 -9.63041 -8.18278 -6.32521 0.66077 1.31889 1.44666 1.45435 1.56377 2.09234 2.39117 2.55425 2.71684 3.12954 3.59519 4.15946 4.35782 4.47703 4.54755 4.72218 4.84067 4.84845 5.06829 5.23549 5.40694 5.42952 5.52233 5.60947 5.75621 5.90247 6.07885 6.28145 6.74860 6.82489 7.08496 7.32366 7.52355 8.90415 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.039278 B = 0.007324 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.701971 B = 3822.082181 C = 4287.285519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.693 5.693 14 C 0.581 3.419 15 O -0.578 6.578 16 C -0.039 4.039 17 C -0.213 4.213 18 C 0.018 3.982 19 N -0.366 5.366 20 H 0.464 0.536 21 N -0.280 5.280 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.160 0.840 30 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 5.965 15.544 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.189 1.189 13 N -0.341 5.341 14 C 0.367 3.633 15 O -0.457 6.457 16 C -0.198 4.198 17 C -0.241 4.241 18 C -0.127 4.127 19 N -0.083 5.083 20 H 0.313 0.687 21 N -0.118 5.118 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.237 0.763 29 H 0.178 0.822 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.496 5.567 15.069 16.979 hybrid contribution 0.507 0.111 -0.210 0.560 sum -4.989 5.678 14.859 16.671 Atomic orbital electron populations 1.21689 0.96620 0.99501 1.00454 1.21711 0.94189 0.98820 1.00530 1.18478 0.93988 0.89296 0.81068 0.97511 1.21536 0.91289 1.43681 1.02422 0.91409 1.25770 1.03363 0.94550 0.94562 1.70108 1.37440 1.43968 1.03824 0.85372 0.79013 0.78791 0.77384 1.19630 1.21014 1.18940 1.46183 1.14956 1.55218 1.17708 1.17442 0.82113 0.78065 0.85716 1.90721 1.52434 1.61723 1.40834 1.22005 0.96261 1.07746 0.93813 1.22060 0.98573 1.05108 0.98372 1.23568 0.90350 1.03482 0.95294 1.43493 1.11478 1.38988 1.14375 0.68709 1.73496 1.24526 1.15057 0.98709 0.93054 0.93956 0.95126 0.92271 0.93655 0.92485 0.76295 0.82204 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.52 71.98 0.61 -5.25 16 2 C -0.11 -5.79 5.49 30.60 0.17 -5.62 16 3 C 0.27 14.91 2.11 44.24 0.09 15.01 16 4 H 0.01 0.44 7.55 -2.39 -0.02 0.43 16 5 C -0.55 -30.62 8.67 25.60 0.22 -30.40 16 6 H 0.07 3.59 7.73 -2.91 -0.02 3.57 16 7 C 0.02 1.00 5.20 84.66 0.44 1.44 16 8 N -0.92 -54.01 12.00 21.45 0.26 -53.75 16 9 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.69 -32.22 5.02 -449.12 -2.25 -34.48 16 14 C 0.58 26.21 6.40 86.75 0.56 26.77 16 15 O -0.58 -29.63 14.06 -3.93 -0.06 -29.68 16 16 C -0.04 -1.36 7.13 42.46 0.30 -1.06 16 17 C -0.21 -5.77 10.81 22.41 0.24 -5.53 16 18 C 0.02 0.29 12.02 83.54 1.00 1.29 16 19 N -0.37 -6.48 6.83 -57.51 -0.39 -6.88 16 20 H 0.46 3.77 8.96 -220.00 -1.97 1.80 16 21 N -0.28 -8.22 11.92 -48.17 -0.57 -8.79 16 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.95 5.64 -2.39 -0.01 1.94 16 24 H 0.03 1.53 7.86 -2.39 -0.02 1.51 16 25 H 0.06 3.29 6.65 -2.39 -0.02 3.28 16 26 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.40 17.08 8.25 -92.71 -0.76 16.31 16 29 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.24 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -74.03 260.40 1.09 -72.94 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -1.56 Total: 18.69 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 3.64 Total: -3.36 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.96 Total: -103.89 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.06 Total: -29.68 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.03 1.09 -72.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062777526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.695 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds