Wall clock time and date at job start Sun Mar 29 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47194 * 240.00590 * 3 2 1 5 5 H 1.48497 * 109.47165 * 120.00146 * 3 2 1 6 6 H 1.48506 * 109.46885 * 0.02562 * 3 2 1 7 7 C 1.40048 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00031 * 354.99996 * 7 2 1 9 9 C 1.46373 * 120.00201 * 174.99572 * 7 2 1 10 10 O 1.21691 * 120.00094 * 5.04990 * 9 7 2 11 11 N 1.34775 * 120.00329 * 185.04606 * 9 7 2 12 12 C 1.47117 * 125.81517 * 355.50891 * 11 9 7 13 13 C 1.53990 * 107.65838 * 182.15469 * 12 11 9 14 14 C 1.55209 * 103.91713 * 17.83782 * 13 12 11 15 15 H 1.08992 * 111.62015 * 209.73426 * 14 13 12 16 16 C 1.52929 * 107.50057 * 87.26129 * 14 13 12 17 17 C 1.52891 * 109.46696 * 192.15350 * 16 14 13 18 18 C 1.52593 * 108.83647 * 64.51131 * 17 16 14 19 19 C 1.51512 * 111.06860 * 300.74789 * 18 17 16 20 20 C 1.46450 * 125.81650 * 175.20274 * 11 9 7 21 21 H 1.09004 * 106.88501 * 272.34215 * 20 11 9 22 22 H 0.97008 * 120.00209 * 185.00344 * 1 2 3 23 23 H 1.08992 * 109.81688 * 301.69183 * 12 11 9 24 24 H 1.08996 * 109.81517 * 62.54309 * 12 11 9 25 25 H 1.08999 * 110.54140 * 136.44680 * 13 12 11 26 26 H 1.09002 * 110.53750 * 259.09302 * 13 12 11 27 27 H 1.09004 * 109.47429 * 312.14823 * 16 14 13 28 28 H 1.08998 * 109.47485 * 72.14755 * 16 14 13 29 29 H 1.08993 * 109.57884 * 184.32648 * 17 16 14 30 30 H 1.09005 * 109.57253 * 304.71486 * 17 16 14 31 31 H 1.09004 * 109.15812 * 61.15976 * 18 17 16 32 32 H 1.09004 * 109.15961 * 180.33428 * 18 17 16 33 33 H 1.08996 * 108.37294 * 168.97176 * 19 18 17 34 34 H 1.09000 * 108.36935 * 286.27103 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0943 1.6964 -1.2126 5 1 3.0945 1.6963 1.2124 6 1 1.2757 2.7464 0.0006 7 6 2.0069 -1.2129 -0.0005 8 1 1.4700 -2.1465 0.0806 9 6 3.4664 -1.2153 -0.1111 10 8 4.0785 -0.1635 -0.1100 11 7 4.1326 -2.3823 -0.2141 12 6 3.5351 -3.7244 -0.1356 13 6 4.6768 -4.7514 -0.2507 14 6 5.9535 -3.9274 0.0656 15 1 6.8263 -4.3244 -0.4525 16 6 6.1483 -3.9453 1.5824 17 6 7.2037 -2.9103 1.9727 18 6 6.6790 -1.5187 1.6313 19 6 6.3731 -1.3997 0.1521 20 6 5.5735 -2.5305 -0.4295 21 1 5.7356 -2.5170 -1.5074 22 1 -0.4851 -0.8369 0.0733 23 1 3.0236 -3.8459 0.8192 24 1 2.8282 -3.8626 -0.9536 25 1 4.5471 -5.5508 0.4788 26 1 4.7232 -5.1601 -1.2602 27 1 5.2049 -3.7050 2.0728 28 1 6.4780 -4.9362 1.8947 29 1 7.3997 -2.9743 3.0430 30 1 8.1233 -3.0998 1.4191 31 1 5.7692 -1.3297 2.2011 32 1 7.4302 -0.7767 1.9021 33 1 5.8235 -0.4728 -0.0116 34 1 7.3168 -1.3381 -0.3899 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134820775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:51 Heat of formation + Delta-G solvation = -64.772950 kcal Electronic energy + Delta-G solvation = -16293.767427 eV Core-core repulsion = 13804.012411 eV Total energy + Delta-G solvation = -2489.755016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92716 -36.85820 -34.65229 -32.93085 -31.67631 -29.60928 -27.87443 -25.95151 -22.64771 -22.61190 -20.93058 -19.85210 -18.16973 -17.20296 -15.77298 -15.37916 -14.59348 -14.42195 -14.04129 -13.75494 -13.19312 -12.92009 -12.75048 -12.11816 -12.04507 -11.84532 -11.51657 -11.44025 -11.27543 -11.07415 -10.51579 -10.36458 -10.29298 -9.95381 -9.72134 -9.62067 -9.17559 -8.92416 -7.66788 -7.46971 -6.94327 -4.91386 3.60275 3.69428 4.03885 4.30754 4.35110 4.60945 4.80162 4.96272 5.03224 5.32739 5.41152 5.48330 5.54234 5.69437 5.73436 5.81717 5.85984 6.00031 6.06290 6.10619 6.19475 6.34032 6.38076 6.45914 6.54249 6.63286 6.66838 6.87169 7.06316 7.23426 7.76519 7.87657 8.19399 8.85193 9.09337 10.05918 10.33839 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.010689 C = 0.009001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.118991 B = 2618.765153 C = 3110.042921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.059 3.941 3 Si 1.134 2.866 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.325 1.325 7 C -0.591 4.591 8 H 0.071 0.929 9 C 0.572 3.428 10 O -0.608 6.608 11 N -0.628 5.628 12 C 0.122 3.878 13 C -0.131 4.131 14 C -0.096 4.096 15 H 0.083 0.917 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.157 4.157 20 C 0.159 3.841 21 H 0.037 0.963 22 H 0.277 0.723 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -8.691 1.496 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.158 4.158 3 Si 0.967 3.033 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.257 1.257 7 C -0.627 4.627 8 H 0.089 0.911 9 C 0.383 3.617 10 O -0.503 6.503 11 N -0.363 5.363 12 C -0.003 4.003 13 C -0.169 4.169 14 C -0.115 4.115 15 H 0.101 0.899 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.143 4.143 19 C -0.194 4.194 20 C 0.055 3.945 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.627 -6.573 1.424 12.577 hybrid contribution 0.038 -2.223 0.026 2.223 sum 10.665 -8.796 1.450 13.900 Atomic orbital electron populations 1.70665 1.07615 1.31929 1.35813 1.27191 0.95337 1.05030 0.88279 0.82293 0.71240 0.70641 0.79120 1.21344 1.21560 1.25741 1.22079 0.89850 0.96281 1.54493 0.91115 1.18084 0.88330 0.79875 0.75384 1.89868 1.68273 1.30205 1.61907 1.47848 1.05595 1.05348 1.77479 1.21526 0.95061 0.82926 1.00748 1.22703 0.95021 0.97624 1.01547 1.22013 0.97313 0.95600 0.96571 0.89912 1.21499 0.99695 0.98189 0.95142 1.21436 0.98093 0.95967 0.99997 1.20975 1.00475 0.95611 0.97264 1.21414 0.99504 1.03460 0.95014 1.20275 0.83190 0.93333 0.97743 0.94530 0.91264 0.92860 0.92715 0.90878 0.91475 0.91637 0.92617 0.92654 0.92522 0.92281 0.92836 0.85353 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.23 13.64 55.55 0.76 -23.47 16 2 C 0.06 1.71 5.52 -17.37 -0.10 1.62 16 3 Si 1.13 30.16 25.83 -169.99 -4.39 25.77 16 4 H -0.29 -7.75 6.96 56.52 0.39 -7.35 16 5 H -0.29 -7.73 7.10 56.52 0.40 -7.32 16 6 H -0.33 -8.38 7.11 56.52 0.40 -7.97 16 7 C -0.59 -16.83 9.49 -35.63 -0.34 -17.17 16 8 H 0.07 2.00 7.39 -52.48 -0.39 1.61 16 9 C 0.57 15.35 7.52 -12.99 -0.10 15.25 16 10 O -0.61 -17.13 9.29 5.20 0.05 -17.08 16 11 N -0.63 -13.92 3.29 -168.29 -0.55 -14.47 16 12 C 0.12 2.25 5.74 -3.19 -0.02 2.23 16 13 C -0.13 -1.84 6.33 -25.04 -0.16 -2.00 16 14 C -0.10 -1.40 3.36 -89.49 -0.30 -1.70 16 15 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 16 C -0.11 -1.51 4.97 -26.82 -0.13 -1.64 16 17 C -0.12 -1.62 5.94 -27.00 -0.16 -1.78 16 18 C -0.11 -1.79 5.91 -27.69 -0.16 -1.95 16 19 C -0.16 -2.96 5.17 -28.87 -0.15 -3.11 16 20 C 0.16 2.99 2.85 -69.35 -0.20 2.79 16 21 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 22 H 0.28 7.74 8.72 -40.82 -0.36 7.39 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.88 7.86 -51.93 -0.41 0.48 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.06 7.75 -51.93 -0.40 0.65 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.13 2.97 4.63 -52.21 -0.24 2.73 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -30.56 261.92 -7.25 -37.81 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -5.25 Total: -5.04 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.81 Total: -7.47 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.20 Total: -37.94 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.05 Total: -17.08 kcal Atomic # 14 Polarization: 30.16 SS G_CDS: -4.39 Total: 25.77 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.56 -7.25 -37.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134820775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.964 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds