Wall clock time and date at job start Sun Mar 29 2020 21:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35552 * 116.99914 * 2 1 4 4 C 1.38914 * 120.46410 * 179.97438 * 3 2 1 5 5 C 1.39245 * 118.28264 * 179.97438 * 4 3 2 6 6 N 1.38615 * 120.49408 * 179.97438 * 5 4 3 7 7 C 1.46492 * 119.99622 * 185.00501 * 6 5 4 8 8 C 1.46503 * 119.99814 * 5.00246 * 6 5 4 9 9 C 1.50692 * 109.47224 * 90.00359 * 8 6 5 10 10 H 1.08006 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00331 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99765 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47138 * 89.99777 * 13 11 9 15 15 H 1.48500 * 109.47135 * 209.99709 * 13 11 9 16 16 H 1.48501 * 109.47293 * 330.00167 * 13 11 9 17 17 N 1.33141 * 119.00748 * 0.02562 * 5 4 3 18 18 C 1.31723 * 120.83482 * 0.02562 * 17 5 4 19 19 N 1.31770 * 121.89652 * 359.97438 * 18 17 5 20 20 H 1.09005 * 109.46869 * 60.00575 * 1 2 3 21 21 H 1.09005 * 109.46542 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47778 * 300.00000 * 1 2 3 23 23 H 1.07993 * 120.86129 * 0.25266 * 4 3 2 24 24 H 1.08994 * 109.47452 * 89.99915 * 7 6 5 25 25 H 1.09010 * 109.46840 * 209.99975 * 7 6 5 26 26 H 1.09001 * 109.47572 * 329.99688 * 7 6 5 27 27 H 1.08999 * 109.46504 * 209.99835 * 8 6 5 28 28 H 1.08993 * 109.47357 * 329.99658 * 8 6 5 29 29 H 0.96999 * 120.00351 * 180.02562 * 12 11 9 30 30 H 1.08008 * 119.05107 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4310 1.2917 0.0005 5 6 4.0154 2.5556 0.0000 6 7 5.3948 2.6927 0.0010 7 6 5.9985 4.0229 0.1111 8 6 6.2488 1.5073 -0.1079 9 6 6.5306 1.2230 -1.5607 10 1 6.1148 1.8612 -2.3264 11 6 7.3192 0.1482 -1.9125 12 7 7.8260 -0.6286 -0.9802 13 14 7.6679 -0.2046 -3.7134 14 1 8.8975 0.5165 -4.1300 15 1 7.8620 -1.6646 -3.9033 16 1 6.5217 0.2539 -4.5387 17 7 3.2296 3.6303 -0.0005 18 6 1.9180 3.5078 0.0000 19 7 1.3289 2.3291 0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 4.0399 0.3999 -0.0031 24 1 6.1562 4.2645 1.1621 25 1 6.9551 4.0321 -0.4114 26 1 5.3334 4.7619 -0.3357 27 1 7.1876 1.6867 0.4159 28 1 5.7415 0.6519 0.3380 29 1 8.3811 -1.3846 -1.2276 30 1 1.3080 4.3990 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260579920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:30 Heat of formation + Delta-G solvation = 19.184107 kcal Electronic energy + Delta-G solvation = -15036.675633 eV Core-core repulsion = 12447.020926 eV Total energy + Delta-G solvation = -2589.654708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47462 -38.14331 -36.20594 -32.89771 -31.71079 -30.77499 -28.01063 -27.24093 -25.24715 -23.86631 -22.81787 -20.84708 -17.94779 -17.28201 -16.60750 -15.72433 -15.42823 -14.82281 -14.58030 -14.36102 -14.17551 -13.52385 -13.17969 -13.04229 -12.19379 -11.80492 -11.56729 -11.33483 -11.30085 -10.99703 -10.76058 -10.35518 -10.24179 -9.85552 -9.53163 -8.80080 -8.65494 -8.56730 -7.09914 -6.16711 -4.25834 1.74201 2.04413 3.23345 3.28322 3.30412 3.35443 3.85279 4.33672 4.51475 4.63698 5.00885 5.15563 5.41012 5.47202 5.67334 5.73640 5.95147 6.03504 6.09038 6.28816 6.38854 6.53596 6.94581 7.12774 7.32977 7.63590 7.75802 8.02248 8.07236 8.16838 8.75612 8.88531 9.41376 10.88318 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.008719 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.857160 B = 3210.586337 C = 3876.049309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.305 6.305 3 C 0.371 3.629 4 C -0.300 4.300 5 C 0.465 3.535 6 N -0.574 5.574 7 C 0.099 3.901 8 C 0.246 3.754 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.606 5.606 18 C 0.360 3.640 19 N -0.631 5.631 20 H 0.056 0.944 21 H 0.091 0.909 22 H 0.056 0.944 23 H 0.154 0.846 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 4.469 2.448 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.210 6.210 3 C 0.190 3.810 4 C -0.329 4.329 5 C 0.222 3.778 6 N -0.281 5.281 7 C -0.044 4.044 8 C 0.127 3.873 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.336 5.336 18 C 0.069 3.931 19 N -0.368 5.368 20 H 0.075 0.925 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.171 0.829 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.488 4.741 2.484 10.893 hybrid contribution 0.530 -0.921 -1.041 1.487 sum -8.958 3.819 1.443 9.844 Atomic orbital electron populations 1.22789 0.77842 1.02399 1.02225 1.86237 1.22387 1.24867 1.87529 1.19613 0.88884 0.84364 0.88091 1.21138 0.92482 0.99783 1.19492 1.18234 0.86133 0.87854 0.85547 1.47069 1.00685 1.09166 1.71213 1.21513 0.98678 0.84129 1.00090 1.19516 0.89036 0.81286 0.97497 1.21486 1.31510 1.12548 0.92061 0.92120 1.24941 0.95349 0.95564 0.97994 1.69918 1.33489 1.16915 1.32685 0.86468 0.78725 0.77540 0.84602 1.20473 1.20958 1.19801 1.67941 1.06287 1.32626 1.26713 1.24074 0.87508 0.93517 0.88030 1.67960 1.41421 0.98942 1.28460 0.92490 0.89065 0.92528 0.82883 0.94107 0.91265 0.91118 0.94121 0.94070 0.92448 0.79513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.41 101.05 1.05 1.61 16 2 O -0.30 -5.44 10.49 -18.35 -0.19 -5.63 16 3 C 0.37 7.25 7.52 -16.79 -0.13 7.12 16 4 C -0.30 -6.45 9.28 -38.96 -0.36 -6.81 16 5 C 0.46 9.93 7.38 -154.72 -1.14 8.78 16 6 N -0.57 -12.47 2.96 -182.99 -0.54 -13.01 16 7 C 0.10 1.79 10.51 59.84 0.63 2.42 16 8 C 0.25 6.07 5.03 -5.20 -0.03 6.04 16 9 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 10 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 N -0.61 -11.62 9.23 -13.87 -0.13 -11.75 16 18 C 0.36 6.01 12.28 -92.24 -1.13 4.88 16 19 N -0.63 -11.26 9.38 -14.72 -0.14 -11.40 16 20 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 21 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 23 H 0.15 3.52 6.15 -52.49 -0.32 3.20 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.23 8.07 -51.92 -0.42 0.81 16 26 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 27 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 28 H 0.04 1.07 6.05 -51.93 -0.31 0.75 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.19 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 265.83 15.07 4.01 4.01 Total: -1.00 -29.78 265.83 -6.32 -36.10 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.51 Total: -0.92 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.53 Total: 10.86 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.07 Total: -60.55 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.19 Total: -5.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.78 -6.32 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.281 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds