Wall clock time and date at job start Sun Mar 29 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48503 * 109.47321 * 270.00166 * 3 2 1 5 5 H 1.48507 * 109.47236 * 29.99885 * 3 2 1 6 6 H 1.48498 * 109.47600 * 149.99726 * 3 2 1 7 7 C 1.38946 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99729 * 198.87822 * 7 2 1 9 9 N 1.37098 * 120.00199 * 18.88455 * 7 2 1 10 10 C 1.34774 * 120.00254 * 43.18691 * 9 7 2 11 11 O 1.21295 * 119.99947 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99932 * 180.02562 * 10 9 7 13 13 C 1.54896 * 110.75484 * 179.97438 * 12 10 9 14 14 C 1.54269 * 104.31197 * 156.32381 * 13 12 10 15 15 C 1.53879 * 106.59995 * 336.32653 * 14 13 12 16 16 C 1.54266 * 106.59505 * 359.97438 * 15 14 13 17 17 C 1.46498 * 119.99653 * 223.18632 * 9 7 2 18 18 C 1.53001 * 117.50303 * 9.28986 * 17 9 7 19 19 C 1.53005 * 117.50256 * 300.62553 * 17 9 7 20 20 H 0.97002 * 120.00254 * 354.78497 * 1 2 3 21 21 H 1.09002 * 110.82131 * 56.66446 * 12 10 9 22 22 H 1.08998 * 110.48293 * 37.58309 * 13 12 10 23 23 H 1.08995 * 110.48866 * 275.06855 * 13 12 10 24 24 H 1.08996 * 110.03528 * 95.61095 * 14 13 12 25 25 H 1.08999 * 110.03523 * 217.04488 * 14 13 12 26 26 H 1.08992 * 110.03109 * 119.28449 * 15 14 13 27 27 H 1.08993 * 110.03416 * 240.66972 * 15 14 13 28 28 H 1.09005 * 110.48228 * 142.28998 * 16 15 14 29 29 H 1.08996 * 110.49217 * 264.79644 * 16 15 14 30 30 H 1.08999 * 115.54786 * 154.95696 * 17 9 7 31 31 H 1.09005 * 117.49704 * 359.97438 * 18 17 9 32 32 H 1.08993 * 117.50403 * 145.02167 * 18 17 9 33 33 H 1.08999 * 117.49997 * 214.98123 * 19 17 9 34 34 H 1.08995 * 117.49385 * 0.02562 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0453 -1.2283 0.3032 9 7 1.3787 -2.3589 -0.3832 10 6 0.5757 -2.3611 -1.4656 11 8 0.4101 -1.3406 -2.1000 12 6 -0.1174 -3.6311 -1.8870 13 6 -0.9822 -3.3915 -3.1495 14 6 -1.1101 -4.7870 -3.7946 15 6 0.0933 -5.6105 -3.3030 16 6 0.9107 -4.6865 -2.3768 17 6 1.5783 -3.5912 0.3833 18 6 2.3195 -3.4814 1.7173 19 6 3.0080 -4.1214 0.5091 20 1 -0.4850 0.8366 0.0764 21 1 -0.7238 -4.0297 -1.0738 22 1 -0.4822 -2.7015 -3.8291 23 1 -1.9641 -3.0081 -2.8722 24 1 -2.0400 -5.2603 -3.4797 25 1 -1.0841 -4.7001 -4.8809 26 1 -0.2528 -6.4833 -2.7494 27 1 0.7027 -5.9238 -4.1506 28 1 1.3102 -5.2490 -1.5329 29 1 1.7177 -4.2076 -2.9312 30 1 0.7742 -4.3238 0.3132 31 1 2.6591 -2.4921 2.0244 32 1 2.0035 -4.1419 2.5246 33 1 3.1445 -5.2027 0.5221 34 1 3.8001 -3.5529 0.0218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334425847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:15 Heat of formation + Delta-G solvation = -31.401927 kcal Electronic energy + Delta-G solvation = -16079.555240 eV Core-core repulsion = 13591.247300 eV Total energy + Delta-G solvation = -2488.307939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74989 -38.33465 -37.40071 -34.71061 -32.84887 -30.10940 -29.47967 -26.81621 -23.38284 -23.05284 -22.27704 -21.05466 -20.38300 -18.45455 -17.85694 -16.81008 -16.45568 -16.09640 -15.54746 -15.05522 -14.96965 -14.25554 -14.06504 -13.74302 -13.15013 -12.90149 -12.77782 -12.49730 -12.23902 -12.09411 -12.01973 -11.94923 -11.87034 -11.61619 -11.50408 -11.23691 -11.10038 -10.71143 -9.85964 -8.93149 -8.20121 -5.96942 1.32840 1.41640 1.46255 2.25972 2.43853 3.09999 3.15430 3.39375 3.75810 3.81488 3.96877 4.14547 4.29509 4.38822 4.53070 4.60395 4.61367 4.72908 4.74577 4.89464 4.91682 5.04894 5.07251 5.17230 5.23733 5.33169 5.39866 5.46961 5.50164 5.50947 5.56491 6.20902 7.05168 7.24959 7.74277 8.41889 8.88917 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.011103 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.666153 B = 2521.175503 C = 3241.040346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.019 3.981 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.076 0.924 9 N -0.444 5.444 10 C 0.472 3.528 11 O -0.593 6.593 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.102 4.102 17 C 0.051 3.949 18 C -0.178 4.178 19 C -0.177 4.177 20 H 0.258 0.742 21 H 0.091 0.909 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 -13.079 -1.236 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.094 0.906 9 N -0.164 5.164 10 C 0.262 3.738 11 O -0.475 6.475 12 C -0.125 4.125 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.140 4.140 17 C -0.054 4.054 18 C -0.216 4.216 19 C -0.216 4.216 20 H 0.067 0.933 21 H 0.109 0.891 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.006 -12.438 -1.606 12.582 hybrid contribution 0.186 1.596 0.142 1.613 sum 1.192 -10.842 -1.464 11.005 Atomic orbital electron populations 1.69948 1.08045 1.27472 1.45379 1.26052 0.95517 1.02637 0.94494 0.85337 0.79116 0.78697 0.77466 1.21935 1.20572 1.17666 1.19098 0.94977 0.85543 1.48775 0.90633 1.43029 1.43577 1.07305 1.22496 1.20740 0.82472 0.89984 0.80615 1.90458 1.64585 1.36580 1.55842 1.22226 0.97820 0.93750 0.98739 1.22127 0.98282 0.98168 0.95705 1.22132 0.99454 0.93381 1.00317 1.22126 0.96012 0.97877 0.99133 1.22365 0.96408 0.95345 0.99848 1.21994 0.95766 0.90205 0.97483 1.23159 1.04422 1.02167 0.91834 1.23307 0.95468 1.01089 1.01725 0.93291 0.89111 0.93839 0.93238 0.90257 0.91082 0.89465 0.90590 0.89502 0.93745 0.85535 0.90468 0.86473 0.85534 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.99 11.68 21.66 0.25 -54.73 16 2 C 0.02 1.11 4.36 84.93 0.37 1.48 16 3 Si 0.97 47.27 29.60 68.60 2.03 49.30 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.36 -20.25 7.77 84.04 0.65 -19.60 16 8 H 0.08 4.16 7.49 -2.91 -0.02 4.14 16 9 N -0.44 -22.85 2.85 -613.13 -1.75 -24.60 16 10 C 0.47 25.05 6.35 87.66 0.56 25.61 16 11 O -0.59 -37.54 13.40 -3.08 -0.04 -37.58 16 12 C -0.10 -4.07 2.32 -10.12 -0.02 -4.09 16 13 C -0.10 -3.88 5.89 31.67 0.19 -3.70 16 14 C -0.12 -2.95 6.80 31.32 0.21 -2.73 16 15 C -0.11 -2.61 6.80 31.32 0.21 -2.39 16 16 C -0.10 -3.10 5.61 31.80 0.18 -2.92 16 17 C 0.05 1.96 4.72 44.99 0.21 2.17 16 18 C -0.18 -6.19 9.82 30.62 0.30 -5.89 16 19 C -0.18 -5.61 10.24 30.62 0.31 -5.30 16 20 H 0.26 15.66 8.32 -92.71 -0.77 14.89 16 21 H 0.09 3.33 7.44 -2.39 -0.02 3.31 16 22 H 0.04 1.86 7.44 -2.39 -0.02 1.84 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 2.29 6.73 -2.38 -0.02 2.27 16 29 H 0.04 1.54 8.05 -2.39 -0.02 1.52 16 30 H 0.13 4.25 6.18 -2.39 -0.01 4.24 16 31 H 0.08 3.15 6.89 -2.38 -0.02 3.13 16 32 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -74.63 273.23 4.74 -69.90 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.07 Total: 15.07 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.17 Total: -17.36 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -1.50 Total: -79.33 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.04 Total: -37.58 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -74.63 4.74 -69.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334425847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.493 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds