Wall clock time and date at job start Sun Mar 29 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48496 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47183 * 300.00310 * 3 2 1 6 6 H 1.48497 * 109.46906 * 60.00449 * 3 2 1 7 7 C 1.40047 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99969 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99696 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00480 * 180.02562 * 9 7 2 12 12 C 1.47575 * 134.49511 * 180.02562 * 11 9 7 13 13 C 1.53952 * 86.11843 * 155.35978 * 12 11 9 14 14 C 1.52994 * 113.74232 * 137.95221 * 13 12 11 15 15 C 1.54961 * 110.92578 * 66.53990 * 14 13 12 16 16 C 1.54270 * 104.16191 * 156.29427 * 15 14 13 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.47581 * 134.49093 * 359.97438 * 11 9 7 20 20 H 0.96993 * 120.00009 * 359.97438 * 1 2 3 21 21 H 1.08995 * 113.77292 * 41.05850 * 12 11 9 22 22 H 1.08998 * 113.87038 * 269.66900 * 12 11 9 23 23 H 1.09000 * 113.74075 * 269.15132 * 13 12 11 24 24 H 1.09001 * 110.67554 * 303.23074 * 14 13 12 25 25 H 1.08997 * 110.47708 * 37.64024 * 15 14 13 26 26 H 1.09002 * 110.53308 * 274.97416 * 15 14 13 27 27 H 1.09002 * 110.03399 * 217.13605 * 16 15 14 28 28 H 1.08995 * 110.02943 * 95.75505 * 16 15 14 29 29 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 30 30 H 1.09001 * 110.03705 * 240.64196 * 17 16 15 31 31 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 32 32 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 33 33 H 1.08998 * 113.77201 * 90.33673 * 19 11 9 34 34 H 1.09004 * 113.77124 * 318.94358 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.5545 -5.0697 -0.0010 13 6 2.9279 -5.3424 -0.6409 14 6 3.6381 -6.5732 -0.0740 15 6 2.8709 -7.8702 -0.4350 16 6 3.9445 -8.9759 -0.3641 17 6 5.3032 -8.2848 -0.5730 18 6 5.0088 -6.7826 -0.7644 19 6 3.3779 -4.0170 -0.0010 20 1 -0.4850 0.8400 0.0004 21 1 0.7125 -5.2919 -0.6566 22 1 1.4417 -5.4965 0.9956 23 1 2.9158 -5.3232 -1.7307 24 1 3.7591 -6.4845 1.0057 25 1 2.4594 -7.8021 -1.4419 26 1 2.0792 -8.0604 0.2897 27 1 3.7751 -9.7118 -1.1502 28 1 3.9180 -9.4600 0.6121 29 1 5.9359 -8.4327 0.3021 30 1 5.7937 -8.6857 -1.4600 31 1 5.7761 -6.1787 -0.2799 32 1 4.9454 -6.5382 -1.8247 33 1 3.8022 -4.1325 0.9963 34 1 3.9913 -3.3989 -0.6566 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335692435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:57 Heat of formation + Delta-G solvation = -48.733949 kcal Electronic energy + Delta-G solvation = -15175.884441 eV Core-core repulsion = 12686.824929 eV Total energy + Delta-G solvation = -2489.059512 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89301 -38.73013 -37.35222 -34.67164 -31.53816 -29.53216 -29.03936 -27.20418 -26.66465 -22.82560 -20.96885 -20.88173 -20.46196 -18.61522 -17.67112 -16.67785 -16.54975 -16.17754 -15.68551 -14.96815 -14.40877 -14.20343 -13.96924 -13.88737 -13.46662 -13.08166 -12.89144 -12.79782 -12.48086 -12.25974 -12.00461 -11.96435 -11.83186 -11.49058 -11.38230 -11.14187 -11.07520 -10.98846 -9.86542 -9.15984 -8.33131 -6.89986 1.37064 1.37945 1.56352 2.20058 2.40149 2.67455 3.38339 3.50836 3.84136 3.90499 4.08515 4.26118 4.32255 4.60716 4.63512 4.68601 4.71635 4.76905 4.79906 4.84198 4.94348 4.97827 5.11912 5.18955 5.22539 5.27557 5.30407 5.45073 5.46973 5.61837 5.63813 5.94276 6.42674 6.82029 7.57143 8.40905 8.63338 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.056211 B = 0.005773 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.002586 B = 4848.980726 C = 5271.293517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.246 1.246 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.554 3.446 10 O -0.638 6.638 11 N -0.684 5.684 12 C 0.103 3.897 13 C -0.084 4.084 14 C -0.077 4.077 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.117 4.117 19 C 0.116 3.884 20 H 0.276 0.724 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 -13.481 -0.919 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.169 1.169 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.601 4.601 8 H 0.102 0.898 9 C 0.361 3.639 10 O -0.526 6.526 11 N -0.423 5.423 12 C -0.020 4.020 13 C -0.103 4.103 14 C -0.096 4.096 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.007 4.007 20 H 0.086 0.914 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.232 -13.220 -0.922 18.034 hybrid contribution -0.345 0.800 0.084 0.876 sum 11.886 -12.420 -0.838 17.212 Atomic orbital electron populations 1.70204 1.09681 1.29052 1.36466 1.27072 0.95587 1.05109 0.91083 0.84912 0.79256 0.74953 0.78776 1.16926 1.19028 1.19042 1.21355 0.94485 0.89660 1.54603 0.89811 1.18495 0.86229 0.83291 0.75856 1.90537 1.16302 1.87361 1.58372 1.50165 1.08948 1.04480 1.78702 1.23012 0.97920 0.81530 0.99557 1.22989 0.93387 0.93950 0.99990 1.22084 0.95253 0.92371 0.99928 1.22400 0.97909 0.94060 1.01467 1.22121 0.94334 0.97525 1.01991 1.22125 0.97158 0.94654 1.02023 1.22394 0.95838 0.96652 1.00608 1.23074 0.83735 0.93697 1.00171 0.91421 0.93457 0.90928 0.88823 0.90217 0.91901 0.91890 0.91419 0.91522 0.91363 0.91286 0.91118 0.91618 0.90146 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.32 11.83 21.84 0.26 -52.06 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 1.00 42.01 29.56 68.60 2.03 44.04 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.56 -33.74 9.33 24.83 0.23 -33.51 16 8 H 0.08 4.54 7.67 -2.91 -0.02 4.52 16 9 C 0.55 34.68 7.98 86.36 0.69 35.37 16 10 O -0.64 -45.94 15.75 -4.31 -0.07 -46.01 16 11 N -0.68 -33.54 3.61 -841.77 -3.04 -36.58 16 12 C 0.10 3.99 8.14 86.48 0.70 4.70 16 13 C -0.08 -2.48 3.30 -10.15 -0.03 -2.51 16 14 C -0.08 -1.67 2.60 -9.48 -0.02 -1.70 16 15 C -0.12 -2.37 6.04 31.70 0.19 -2.18 16 16 C -0.12 -1.92 6.80 31.32 0.21 -1.71 16 17 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 18 C -0.12 -2.11 6.27 31.67 0.20 -1.91 16 19 C 0.12 4.12 8.01 86.47 0.69 4.81 16 20 H 0.28 15.69 8.29 -92.71 -0.77 14.92 16 21 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 23 H 0.09 2.75 8.12 -2.39 -0.02 2.73 16 24 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 25 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.21 8.03 -2.39 -0.02 1.19 16 33 H 0.08 2.55 8.04 -2.39 -0.02 2.54 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -79.40 282.33 3.79 -75.62 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.06 Total: 13.29 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 3.55 Total: 1.70 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.78 Total: -88.64 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.07 Total: -46.01 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -79.40 3.79 -75.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335692435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.882 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds