Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48510 * 109.46794 * 239.99710 * 3 2 1 5 5 H 1.48502 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47491 * 119.99703 * 3 2 1 7 7 C 1.40056 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99701 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00028 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99729 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99881 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.56128 * 116.03407 * 297.90558 * 13 12 11 15 15 C 1.54578 * 104.67380 * 200.01691 * 14 13 12 16 16 C 1.55919 * 104.64695 * 359.97438 * 15 14 13 17 17 C 1.55928 * 104.49868 * 289.71940 * 16 15 14 18 18 C 1.54719 * 104.64266 * 70.32118 * 17 16 15 19 19 C 1.56948 * 100.65332 * 33.77681 * 16 15 14 20 20 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 21 21 H 0.96994 * 119.99762 * 0.02562 * 11 9 7 22 22 H 1.09002 * 109.47285 * 59.99887 * 12 11 9 23 23 H 1.09008 * 109.47038 * 300.00124 * 12 11 9 24 24 H 1.09004 * 110.40410 * 81.20703 * 14 13 12 25 25 H 1.08995 * 110.46215 * 318.86204 * 14 13 12 26 26 H 1.09001 * 110.40465 * 241.18153 * 15 14 13 27 27 H 1.09003 * 110.49579 * 118.82016 * 15 14 13 28 28 H 1.09005 * 115.92370 * 160.03212 * 16 15 14 29 29 H 1.09002 * 110.40561 * 189.07170 * 17 16 15 30 30 H 1.09007 * 110.40171 * 311.48804 * 17 16 15 31 31 H 1.09001 * 110.44155 * 241.19102 * 18 17 16 32 32 H 1.09002 * 110.45735 * 118.82134 * 18 17 16 33 33 H 1.09002 * 112.02663 * 63.17522 * 19 16 15 34 34 H 1.09000 * 112.02645 * 189.62084 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0946 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0011 13 6 2.2107 -6.0793 0.0016 14 6 3.1551 -6.1741 -1.2381 15 6 3.6491 -7.6388 -1.2429 16 6 2.9587 -8.2918 -0.0068 17 6 3.6639 -7.6421 1.2227 18 6 3.1685 -6.1764 1.2284 19 6 1.5914 -7.5214 0.0025 20 1 -0.4850 0.8401 -0.0004 21 1 2.9190 -3.6477 0.0009 22 1 0.5895 -4.9744 -0.8886 23 1 0.5901 -4.9740 0.8914 24 1 3.9963 -5.4896 -1.1282 25 1 2.6053 -5.9554 -2.1534 26 1 4.7332 -7.6745 -1.1356 27 1 3.3421 -8.1421 -2.1598 28 1 2.8983 -9.3802 -0.0145 29 1 3.3663 -8.1467 2.1420 30 1 4.7467 -7.6775 1.1023 31 1 4.0075 -5.4905 1.1107 32 1 2.6284 -5.9603 2.1502 33 1 1.0066 -7.7156 -0.8967 34 1 1.0169 -7.7191 0.9075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335752478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = -53.759197 kcal Electronic energy + Delta-G solvation = -15452.959529 eV Core-core repulsion = 12963.682106 eV Total energy + Delta-G solvation = -2489.277423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15309 -37.02169 -33.31799 -32.23286 -30.32339 -29.45400 -27.72877 -26.40934 -23.98071 -22.00136 -19.84311 -19.48739 -18.06035 -17.19873 -15.46681 -15.21667 -15.14851 -14.83171 -13.96150 -13.78497 -13.39770 -12.45102 -12.36946 -12.09799 -11.76502 -11.47919 -11.24662 -11.05749 -10.96658 -10.93553 -10.69154 -10.55108 -10.54275 -10.35712 -10.21631 -10.03755 -9.67992 -8.80273 -7.55684 -7.40070 -6.13741 -4.59051 3.18359 3.22954 3.24982 4.13730 4.50585 4.56164 4.59087 4.65036 5.04751 5.26948 5.31174 5.35789 5.50586 5.54819 5.55877 5.58939 5.86042 5.88274 5.91037 6.08495 6.11714 6.18087 6.20463 6.36372 6.37390 6.39157 6.42943 6.69517 6.70941 7.47443 8.00055 8.18372 8.39000 9.07015 9.61838 10.65675 10.84974 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.053392 B = 0.006096 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.294680 B = 4592.284995 C = 4774.884689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.764 5.764 12 C 0.164 3.836 13 C -0.081 4.081 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.115 4.115 20 H 0.268 0.732 21 H 0.379 0.621 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 -13.265 -0.001 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.419 5.419 12 C 0.039 3.961 13 C -0.081 4.081 14 C -0.151 4.151 15 C -0.156 4.156 16 C -0.125 4.125 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.154 4.154 20 H 0.079 0.921 21 H 0.210 0.790 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.809 -13.147 -0.002 14.806 hybrid contribution 0.994 0.800 -0.006 1.276 sum 7.803 -12.348 -0.009 14.607 Atomic orbital electron populations 1.70017 1.07041 1.27257 1.35514 1.25701 0.94593 1.00218 0.92655 0.86454 0.79822 0.81161 0.79393 1.19331 1.20582 1.19327 1.20856 0.93492 0.89513 1.54512 0.91592 1.18195 0.87181 0.82485 0.76295 1.90594 1.14134 1.86940 1.54918 1.46044 1.08489 1.04765 1.82618 1.20375 0.92666 0.82605 1.00475 1.23138 0.95117 0.94573 0.95284 1.22613 0.98747 0.95753 0.97972 1.22613 0.99480 0.96008 0.97547 1.23529 0.95652 0.97977 0.95327 1.22624 0.99410 0.95967 0.97548 1.22590 0.98646 0.95757 0.98026 1.23523 0.96134 0.94262 1.01432 0.92123 0.78980 0.93233 0.93271 0.91768 0.91798 0.92123 0.92249 0.88875 0.92235 0.92092 0.91749 0.91787 0.91329 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.50 11.83 55.55 0.66 -22.85 16 2 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.55 -15.74 9.54 -35.63 -0.34 -16.08 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 16.14 7.75 -12.99 -0.10 16.04 16 10 O -0.58 -19.33 15.02 5.20 0.08 -19.25 16 11 N -0.76 -17.45 5.38 -61.72 -0.33 -17.78 16 12 C 0.16 3.25 5.51 -4.04 -0.02 3.22 16 13 C -0.08 -1.20 1.01 -149.13 -0.15 -1.35 16 14 C -0.11 -1.54 5.64 -24.23 -0.14 -1.68 16 15 C -0.12 -1.32 6.21 -24.34 -0.15 -1.48 16 16 C -0.11 -1.15 5.19 -85.36 -0.44 -1.59 16 17 C -0.12 -1.31 6.21 -24.26 -0.15 -1.46 16 18 C -0.11 -1.53 5.66 -24.26 -0.14 -1.67 16 19 C -0.12 -1.46 6.11 -22.46 -0.14 -1.60 16 20 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 21 H 0.38 7.71 8.17 -40.82 -0.33 7.37 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 31 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -33.52 276.37 -7.63 -41.15 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.31 Total: 4.38 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.87 Total: -5.22 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.33 Total: -40.63 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.52 -7.63 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335752478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.606 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds