Wall clock time and date at job start Sun Mar 29 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47270 * 120.00088 * 2 1 3 5 5 C 1.38263 * 119.98832 * 72.93253 * 4 2 1 6 6 C 1.38221 * 120.04994 * 179.72441 * 5 4 2 7 7 C 1.38219 * 120.03048 * 0.54880 * 6 5 4 8 8 C 1.38444 * 119.96656 * 359.72812 * 7 6 5 9 9 F 1.35102 * 120.02248 * 180.02562 * 8 7 6 10 10 C 1.38175 * 119.98506 * 253.20613 * 4 2 1 11 11 N 1.46500 * 109.46999 * 239.99957 * 2 1 3 12 12 C 1.46494 * 120.00103 * 174.56873 * 11 2 1 13 13 C 1.36934 * 120.00006 * 354.57186 * 11 2 1 14 14 H 1.08002 * 119.99998 * 17.22489 * 13 11 2 15 15 C 1.38811 * 120.00145 * 197.23216 * 13 11 2 16 16 N 1.31622 * 120.00333 * 17.05913 * 15 13 11 17 17 Si 1.86810 * 120.00004 * 197.06432 * 15 13 11 18 18 H 1.48495 * 109.46860 * 59.99949 * 17 15 13 19 19 H 1.48497 * 109.46810 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46828 * 299.99400 * 17 15 13 21 21 H 1.09002 * 109.46988 * 299.99920 * 1 2 3 22 22 H 1.09002 * 109.47589 * 59.99950 * 1 2 3 23 23 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.97377 * 359.97438 * 5 4 2 25 25 H 1.08011 * 119.98872 * 180.27566 * 6 5 4 26 26 H 1.07993 * 120.01984 * 179.70514 * 7 6 5 27 27 H 1.07997 * 120.01564 * 0.02595 * 10 4 2 28 28 H 1.09001 * 109.47296 * 354.55045 * 12 11 2 29 29 H 1.08999 * 109.47514 * 114.54692 * 12 11 2 30 30 H 1.09005 * 109.47486 * 234.54697 * 12 11 2 31 31 H 0.96991 * 120.00392 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9314 -2.0862 1.3237 6 6 2.3969 -2.7396 2.4493 7 6 2.9537 -2.0173 3.4878 8 6 3.0501 -0.6391 3.3979 9 9 3.5946 0.0680 4.4121 10 6 2.5886 0.0139 2.2673 11 7 2.0183 -0.6906 -1.1962 12 6 3.4532 -0.7215 -1.4897 13 6 1.1335 -1.3073 -2.0399 14 1 0.0827 -1.0620 -1.9936 15 6 1.5870 -2.2477 -2.9546 16 7 2.7740 -2.7954 -2.8018 17 14 0.5125 -2.7360 -4.4027 18 1 0.2254 -1.5382 -5.2321 19 1 1.2212 -3.7489 -5.2254 20 1 -0.7627 -3.3087 -3.9019 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.4921 -2.6510 0.5148 25 1 2.3216 -3.8148 2.5192 26 1 3.3131 -2.5276 4.3691 27 1 2.6630 1.0890 2.1963 28 1 3.9852 -0.1021 -0.7676 29 1 3.8154 -1.7474 -1.4248 30 1 3.6268 -0.3378 -2.4952 31 1 3.0911 -3.4523 -3.4412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335911326.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:34 Heat of formation + Delta-G solvation = -10.682907 kcal Electronic energy + Delta-G solvation = -15263.695720 eV Core-core repulsion = 12652.825920 eV Total energy + Delta-G solvation = -2610.869800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.81951 -40.26438 -37.62789 -34.24067 -31.93638 -31.24978 -30.21000 -27.68300 -25.36459 -23.77774 -23.53924 -21.27740 -18.44052 -17.99189 -17.30839 -16.97628 -16.77867 -16.50158 -15.59630 -15.51667 -15.10379 -14.54057 -14.10495 -13.89284 -13.39728 -13.04265 -12.93184 -12.80869 -12.63245 -12.44639 -12.35129 -12.11578 -11.75889 -11.69781 -11.54125 -10.64104 -9.81912 -9.49455 -8.81438 -7.65865 -5.19930 0.33736 0.37258 1.49589 1.52656 1.57777 2.54465 2.77122 3.28660 3.41020 3.67841 3.88888 4.02222 4.27834 4.45031 4.49747 4.55189 4.64822 4.79430 4.95043 5.01641 5.17702 5.21286 5.23003 5.35044 5.44021 5.54807 5.73523 5.79433 5.92396 6.09206 6.39986 7.20575 7.93538 8.35641 9.27119 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.043685 B = 0.007823 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.804883 B = 3578.115739 C = 3709.694059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.198 3.802 3 H 0.055 0.945 4 C -0.068 4.068 5 C -0.108 4.108 6 C -0.097 4.097 7 C -0.159 4.159 8 C 0.078 3.922 9 F -0.147 7.147 10 C -0.158 4.158 11 N -0.603 5.603 12 C 0.160 3.840 13 C -0.252 4.252 14 H 0.088 0.912 15 C -0.057 4.057 16 N -0.934 5.934 17 Si 0.960 3.040 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.275 1.275 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.106 0.894 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.023 0.977 29 H 0.045 0.955 30 H -0.008 1.008 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 3.238 10.514 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.092 3.908 3 H 0.073 0.927 4 C -0.071 4.071 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.178 4.178 8 C 0.059 3.941 9 F -0.126 7.126 10 C -0.178 4.178 11 N -0.325 5.325 12 C 0.015 3.985 13 C -0.382 4.382 14 H 0.105 0.895 15 C -0.252 4.252 16 N -0.582 5.582 17 Si 0.789 3.211 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.201 1.201 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.124 0.876 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.161 0.839 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.011 0.989 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.725 3.170 10.433 11.039 hybrid contribution -0.034 -0.396 -0.952 1.031 sum -1.759 2.775 9.481 10.034 Atomic orbital electron populations 1.21783 0.93363 1.01800 1.01575 1.19661 0.94824 0.93573 0.82762 0.92730 1.20840 0.96285 0.94528 0.95464 1.21111 0.99424 0.94657 0.97437 1.21217 0.96984 1.00942 0.92381 1.21264 1.03295 0.91855 1.01395 1.17777 0.99823 0.90375 0.86104 1.91450 1.83807 1.78936 1.58417 1.21127 1.02347 1.01272 0.93005 1.44281 1.03163 1.62083 1.23014 1.20812 0.83442 0.99628 0.94645 1.19646 0.91954 1.15375 1.11183 0.89481 1.25613 0.98326 0.98261 1.02952 1.70188 1.20748 1.30252 1.36966 0.85438 0.78362 0.77103 0.80157 1.21073 1.22682 1.20086 0.90864 0.92331 0.93250 0.87578 0.83597 0.82760 0.83942 0.95873 0.93678 0.98916 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.77 71.98 0.56 -3.85 16 2 C 0.20 7.70 3.10 44.25 0.14 7.83 16 3 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 4 C -0.07 -2.49 4.54 -19.87 -0.09 -2.58 16 5 C -0.11 -4.07 9.19 22.27 0.20 -3.86 16 6 C -0.10 -3.00 10.04 22.26 0.22 -2.78 16 7 C -0.16 -4.47 10.03 22.31 0.22 -4.24 16 8 C 0.08 2.37 7.30 22.38 0.16 2.54 16 9 F -0.15 -4.31 17.27 44.97 0.78 -3.53 16 10 C -0.16 -5.04 9.65 22.31 0.22 -4.82 16 11 N -0.60 -29.02 2.55 -707.00 -1.80 -30.82 16 12 C 0.16 7.97 8.88 127.77 1.13 9.10 16 13 C -0.25 -13.06 8.85 84.03 0.74 -12.32 16 14 H 0.09 4.28 5.76 -2.91 -0.02 4.27 16 15 C -0.06 -3.10 5.23 84.86 0.44 -2.65 16 16 N -0.93 -53.95 10.44 21.65 0.23 -53.73 16 17 Si 0.96 44.28 29.59 68.60 2.03 46.31 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.06 2.02 7.46 -2.39 -0.02 2.00 16 23 H 0.05 1.83 7.37 -2.39 -0.02 1.82 16 24 H 0.11 4.72 7.93 -2.91 -0.02 4.70 16 25 H 0.15 3.78 8.06 -2.90 -0.02 3.76 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.14 3.97 7.99 -2.91 -0.02 3.95 16 28 H 0.02 1.01 7.90 -2.39 -0.02 0.99 16 29 H 0.05 2.52 6.16 -2.39 -0.01 2.50 16 30 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 31 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -58.79 264.96 6.30 -52.49 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.11 Total: 6.92 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 3.96 Total: -17.63 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.58 Total: -84.55 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -58.79 6.30 -52.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335911326.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.804 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds