Wall clock time and date at job start Sun Mar 29 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 115.55000 * 2 1 4 4 O 1.21282 * 120.00103 * 238.54549 * 3 2 1 5 5 N 1.34775 * 120.00029 * 58.55331 * 3 2 1 6 6 C 1.46497 * 120.00132 * 184.50274 * 5 3 2 7 7 C 1.53001 * 109.47008 * 185.02969 * 6 5 3 8 8 C 1.50703 * 115.55017 * 273.77995 * 7 6 5 9 9 H 1.08008 * 119.99597 * 114.46839 * 8 7 6 10 10 C 1.37870 * 120.00287 * 294.48234 * 8 7 6 11 11 N 1.31519 * 120.00015 * 341.79289 * 10 8 7 12 12 Si 1.86799 * 120.00486 * 161.80023 * 10 8 7 13 13 H 1.48494 * 109.47153 * 89.99251 * 12 10 8 14 14 H 1.48499 * 109.47283 * 209.99723 * 12 10 8 15 15 H 1.48508 * 109.46828 * 329.99658 * 12 10 8 16 16 C 1.52999 * 117.49995 * 128.07904 * 7 6 5 17 17 C 1.53003 * 117.50377 * 59.45240 * 7 6 5 18 18 C 1.53002 * 117.49638 * 145.67421 * 2 1 3 19 19 C 1.53001 * 117.49807 * 214.33125 * 2 1 3 20 20 H 1.09007 * 109.46885 * 59.75063 * 1 2 3 21 21 H 1.08997 * 109.47624 * 179.74776 * 1 2 3 22 22 H 1.08998 * 109.46900 * 299.75367 * 1 2 3 23 23 H 0.97009 * 119.99520 * 4.50558 * 5 3 2 24 24 H 1.08997 * 109.47095 * 65.03039 * 6 5 3 25 25 H 1.08994 * 109.47318 * 305.02539 * 6 5 3 26 26 H 0.97001 * 120.00526 * 185.03490 * 11 10 8 27 27 H 1.08998 * 117.49800 * 359.97438 * 16 7 6 28 28 H 1.09000 * 117.49874 * 145.02194 * 16 7 6 29 29 H 1.08993 * 117.50026 * 214.97932 * 17 7 6 30 30 H 1.09005 * 117.49346 * 359.97438 * 17 7 6 31 31 H 1.08998 * 117.49310 * 214.99876 * 18 2 1 32 32 H 1.08998 * 117.50095 * 0.02562 * 18 2 1 33 33 H 1.09001 * 117.49874 * 359.97438 * 19 2 1 34 34 H 1.09000 * 117.49774 * 144.99500 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 2.9360 1.6704 -0.8960 5 7 1.9212 2.2302 0.9958 6 6 2.4740 3.5860 0.9455 7 6 2.1379 4.3222 2.2439 8 6 0.7984 5.0122 2.2719 9 1 0.0305 4.6733 2.9516 10 6 0.5531 6.0758 1.4296 11 7 1.5562 6.7175 0.8714 12 14 -1.2040 6.6056 1.0814 13 1 -1.6221 7.6213 2.0809 14 1 -1.2841 7.1900 -0.2814 15 1 -2.1029 5.4267 1.1681 16 6 3.2913 4.9871 2.9979 17 6 2.6471 3.7149 3.5527 18 6 2.2364 -1.1208 0.7653 19 6 2.2364 -1.1207 -0.7654 20 1 -0.3633 0.5177 -0.8878 21 1 -0.3634 -1.0276 -0.0045 22 1 -0.3633 0.5100 0.8922 23 1 1.3690 1.9590 1.7458 24 1 2.0424 4.1232 0.1010 25 1 3.5562 3.5330 0.8276 26 1 1.3882 7.5100 0.3378 27 1 4.2896 4.8996 2.5692 28 1 3.0814 5.9237 3.5144 29 1 2.0135 3.8147 4.4339 30 1 3.2213 2.7905 3.4886 31 1 3.1713 -0.8747 1.2688 32 1 1.6112 -1.8584 1.2684 33 1 1.6112 -1.8583 -1.2686 34 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404103035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:56 Heat of formation + Delta-G solvation = -17.776395 kcal Electronic energy + Delta-G solvation = -15412.828948 eV Core-core repulsion = 12925.111856 eV Total energy + Delta-G solvation = -2487.717092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07026 -38.74022 -37.49664 -34.93389 -34.07067 -29.71871 -28.32908 -27.20587 -23.87792 -23.30923 -22.92314 -21.24004 -20.31324 -18.34562 -17.63968 -16.80516 -16.66725 -16.29300 -15.87662 -15.22471 -14.92883 -14.37222 -14.05025 -13.73919 -13.49030 -13.30415 -13.20233 -12.96972 -12.81070 -12.40672 -12.35890 -12.06976 -11.49442 -11.44864 -11.09319 -10.93279 -10.75224 -10.46610 -10.04629 -9.92841 -8.16059 -6.21812 1.38817 1.43842 1.52029 1.60219 2.28346 2.39929 2.81161 3.08016 3.49397 3.70314 3.85357 3.96625 4.11412 4.19859 4.50331 4.59885 4.72718 4.73948 4.81834 4.87813 4.92572 4.95569 4.98713 5.06267 5.22793 5.24969 5.29344 5.50596 5.55605 5.64801 5.78582 6.35251 6.70743 6.82730 7.33448 7.43106 8.91544 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.008311 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.845704 B = 3368.346853 C = 3808.342214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.179 4.179 3 C 0.532 3.468 4 O -0.601 6.601 5 N -0.696 5.696 6 C 0.181 3.819 7 C 0.008 3.992 8 C -0.514 4.514 9 H 0.064 0.936 10 C 0.028 3.972 11 N -0.902 5.902 12 Si 0.944 3.056 13 H -0.274 1.274 14 H -0.291 1.291 15 H -0.262 1.262 16 C -0.174 4.174 17 C -0.169 4.169 18 C -0.135 4.135 19 C -0.147 4.147 20 H 0.048 0.952 21 H 0.097 0.903 22 H 0.067 0.933 23 H 0.411 0.589 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -14.652 2.051 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.320 3.680 4 O -0.483 6.483 5 N -0.345 5.345 6 C 0.056 3.944 7 C 0.007 3.993 8 C -0.551 4.551 9 H 0.082 0.918 10 C -0.174 4.174 11 N -0.538 5.538 12 Si 0.769 3.231 13 H -0.200 1.200 14 H -0.217 1.217 15 H -0.186 1.186 16 C -0.212 4.212 17 C -0.207 4.207 18 C -0.172 4.172 19 C -0.185 4.185 20 H 0.067 0.933 21 H 0.116 0.884 22 H 0.086 0.914 23 H 0.247 0.753 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.106 -14.279 1.255 14.488 hybrid contribution -0.674 1.140 -0.189 1.338 sum -2.780 -13.139 1.065 13.472 Atomic orbital electron populations 1.21283 0.88450 1.04178 1.02283 1.21495 0.97250 0.87494 1.11940 1.20401 0.80315 0.86485 0.80792 1.90622 1.39417 1.79598 1.38706 1.45924 1.52155 1.12371 1.24029 1.20551 0.94631 0.80898 0.98281 1.19053 0.94180 0.98162 0.87877 1.20667 0.97479 1.15571 1.21422 0.91776 1.25699 1.00047 0.96238 0.95404 1.70145 1.32337 1.17471 1.33875 0.85777 0.81408 0.78663 0.77225 1.19980 1.21713 1.18648 1.22649 0.96671 0.95801 1.06102 1.22884 1.03861 0.95876 0.98032 1.23210 1.01774 0.97792 0.94410 1.23093 1.01955 0.98229 0.95196 0.93257 0.88391 0.91365 0.75288 0.95216 0.95223 0.93019 0.91410 0.91491 0.89230 0.89109 0.89199 0.84488 0.85280 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.70 71.98 0.70 -1.58 16 2 C -0.18 -4.76 2.50 -52.93 -0.13 -4.90 16 3 C 0.53 20.45 7.13 87.66 0.62 21.07 16 4 O -0.60 -28.62 16.52 -3.03 -0.05 -28.67 16 5 N -0.70 -27.08 5.43 -463.08 -2.52 -29.60 16 6 C 0.18 8.62 5.64 86.38 0.49 9.11 16 7 C 0.01 0.38 1.35 -52.93 -0.07 0.31 16 8 C -0.51 -26.76 8.77 25.60 0.22 -26.54 16 9 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16 10 C 0.03 1.50 5.09 84.65 0.43 1.93 16 11 N -0.90 -51.83 13.38 21.45 0.29 -51.55 16 12 Si 0.94 42.51 29.58 68.60 2.03 44.54 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 16 C -0.17 -7.95 9.88 30.60 0.30 -7.64 16 17 C -0.17 -6.63 9.70 30.60 0.30 -6.33 16 18 C -0.13 -2.65 9.95 30.62 0.30 -2.35 16 19 C -0.15 -3.33 9.75 30.62 0.30 -3.03 16 20 H 0.05 1.20 8.14 -2.38 -0.02 1.19 16 21 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.41 13.88 8.36 -92.70 -0.78 13.10 16 24 H 0.03 1.65 7.81 -2.39 -0.02 1.63 16 25 H 0.03 1.46 7.86 -2.39 -0.02 1.44 16 26 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 27 H 0.07 2.99 8.05 -2.39 -0.02 2.98 16 28 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.19 7.88 -2.39 -0.02 2.17 16 Total: -1.00 -65.60 295.08 3.52 -62.09 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.30 Total: 23.13 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.47 Total: -19.95 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.23 Total: -81.14 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.60 3.52 -62.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404103035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.311 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds