Wall clock time and date at job start Sun Mar 29 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46899 * 109.47107 * 79.70759 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47153 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99780 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00052 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00014 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47121 * 60.00049 * 16 14 12 18 18 H 1.48506 * 109.47165 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47240 * 300.00130 * 16 14 12 20 20 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 21 21 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 22 22 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 23 23 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 24 24 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 26 26 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 27 27 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 28 28 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 29 29 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 30 30 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 31 31 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 32 32 H 1.08995 * 109.47051 * 300.00167 * 11 10 9 33 33 H 1.09003 * 109.46901 * 60.00330 * 11 10 9 34 34 H 0.97005 * 119.99618 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4538 -2.9226 -1.3553 9 6 1.0029 -4.3203 -1.3907 10 6 0.6138 -4.6944 -2.8223 11 6 0.1436 -6.1500 -2.8591 12 6 -0.2404 -6.5184 -4.2690 13 1 -0.1577 -5.7873 -5.0597 14 6 -0.6981 -7.7883 -4.5493 15 7 -0.8002 -8.6780 -3.5862 16 14 -1.1747 -8.2448 -6.2968 17 1 0.0012 -8.0822 -7.1891 18 1 -1.6309 -9.6576 -6.3325 19 1 -2.2726 -7.3577 -6.7583 20 1 -0.3634 0.0029 1.0277 21 1 -0.3633 0.8885 -0.5165 22 1 -0.3634 -0.8915 -0.5113 23 1 4.4336 1.3755 -0.0102 24 1 4.5212 -1.2434 -0.0068 25 1 0.9796 -2.6346 0.6710 26 1 2.6489 -3.1658 0.3553 27 1 0.7472 -2.3048 -1.7258 28 1 1.8092 -4.9708 -1.0519 29 1 0.1397 -4.4402 -0.7359 30 1 -0.1924 -4.0439 -3.1616 31 1 1.4772 -4.5745 -3.4767 32 1 0.9494 -6.8007 -2.5197 33 1 -0.7200 -6.2694 -2.2048 34 1 -1.1219 -9.5716 -3.7835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591256809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:25 Heat of formation + Delta-G solvation = -27.744662 kcal Electronic energy + Delta-G solvation = -14446.945299 eV Core-core repulsion = 11958.795950 eV Total energy + Delta-G solvation = -2488.149348 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.48791 -38.01921 -35.81126 -34.37740 -32.79425 -32.46423 -29.00172 -27.40900 -25.69797 -23.82358 -22.44172 -21.92841 -20.46940 -18.49504 -17.92284 -17.13405 -16.81034 -16.54102 -15.58405 -15.42738 -15.31635 -14.57872 -14.21287 -13.87292 -13.79788 -13.60968 -13.44449 -13.23022 -12.95788 -12.66460 -12.47038 -12.33648 -12.21241 -11.53030 -11.40794 -11.15601 -10.64189 -10.54109 -9.43855 -9.18944 -8.19402 -6.30564 0.81542 1.40713 1.44038 1.51979 1.63570 2.16604 2.41972 3.13623 3.38951 3.88106 3.95821 3.96391 4.24724 4.34348 4.44000 4.55890 4.65082 4.66789 4.72700 4.86474 4.92949 4.99344 5.10187 5.14419 5.24483 5.37106 5.52156 5.61932 5.75504 5.86332 6.03155 6.23177 6.27688 6.44804 6.86071 7.38646 8.92337 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.058507 B = 0.003991 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.461762 B = 7013.614968 C = 7068.355106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 O -0.189 6.189 4 C -0.045 4.045 5 C -0.217 4.217 6 C -0.191 4.191 7 C 0.131 3.869 8 N -0.689 5.689 9 C 0.072 3.928 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.094 0.906 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.238 0.762 24 H 0.155 0.845 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.342 0.658 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.050 0.950 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 18.481 8.519 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 O -0.086 6.086 4 C -0.111 4.111 5 C -0.236 4.236 6 C -0.193 4.193 7 C 0.002 3.998 8 N -0.321 5.321 9 C -0.057 4.057 10 C -0.131 4.131 11 C -0.013 4.013 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.191 1.191 20 H 0.112 0.888 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.254 0.746 24 H 0.173 0.827 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.160 0.840 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.709 18.437 8.377 21.040 hybrid contribution -0.808 -0.823 -0.298 1.191 sum 4.901 17.614 8.080 19.989 Atomic orbital electron populations 1.20415 0.83652 1.04588 1.04489 1.22699 0.94998 0.83737 1.05686 1.84001 1.17658 1.35032 1.71885 1.24623 0.84458 0.96217 1.05792 1.21971 0.97808 0.95595 1.08227 1.20256 0.93945 0.95411 1.09667 1.20180 0.99589 0.90696 0.89293 1.60502 1.46553 1.03205 1.21804 1.21860 0.98057 0.89021 0.96783 1.21378 0.99637 0.96614 0.95423 1.18974 0.94520 0.92232 0.95543 1.21678 1.43546 0.97560 0.95534 0.92293 1.25989 0.95536 0.96476 1.01835 1.70095 1.47783 1.05173 1.34351 0.85494 0.78993 0.77224 0.79296 1.19269 1.20732 1.19075 0.88767 0.89227 0.89692 0.74606 0.82729 0.93794 0.90563 0.83992 0.91917 0.95332 0.93019 0.93153 0.99023 0.98837 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.21 71.24 0.73 -0.51 16 2 C -0.02 -0.46 7.32 24.83 0.18 -0.28 16 3 O -0.19 -4.25 10.65 -2.47 -0.03 -4.28 16 4 C -0.04 -0.83 12.09 66.97 0.81 -0.02 16 5 C -0.22 -4.85 10.87 22.19 0.24 -4.60 16 6 C -0.19 -4.73 5.68 -19.94 -0.11 -4.84 16 7 C 0.13 3.38 5.70 85.56 0.49 3.87 16 8 N -0.69 -20.64 6.49 -517.92 -3.36 -24.00 16 9 C 0.07 2.51 5.69 86.30 0.49 3.00 16 10 C -0.09 -3.92 5.41 30.59 0.17 -3.76 16 11 C 0.02 1.34 4.97 29.85 0.15 1.49 16 12 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 16 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.08 1.42 7.00 -2.39 -0.02 1.40 16 23 H 0.24 2.27 8.06 -2.91 -0.02 2.24 16 24 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.34 9.54 7.85 -89.69 -0.70 8.84 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -67.67 292.22 3.12 -64.55 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.37 Total: 10.93 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.83 Total: -36.73 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.08 Total: -81.24 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.03 Total: -4.28 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.67 3.12 -64.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591256809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.801 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds